Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00541
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo... 42 1e-04
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 28 1.8
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 27 4.0
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 27 4.0
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce... 27 4.0
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 26 5.4
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 26 5.4
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 26 7.1
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 26 7.1
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 7.1
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 9.4
>SPAC12B10.07 |acp1||F-actin capping protein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +1
Query: 547 ELRGTLRVQVHYYEDGNVQLVSSKEIKAPLVASGEVATAKEFVRLVSDAENTYQTAISDN 726
+L G ++VHYYEDGNV L +S+ I S V + +++ EN Q + +
Sbjct: 167 KLEGRSHIRVHYYEDGNVWLDASRPI------SATVEETSKLYEVLAQVENGIQQSFNVE 220
Query: 727 YKTMSDTTFKAL 762
+++D FK L
Sbjct: 221 LSSLNDKKFKEL 232
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2
Query: 428 VDSGTVQLVACIEDHQFQPKNYWNGRWVRC 517
V+S T+ LV+ ++ PKNYWNG W RC
Sbjct: 133 VESFTIVLVSS----KYNPKNYWNGSW-RC 157
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = +1
Query: 598 VQLVSSKEIKAPLVASGEVATAKEFVRLVSDAENTYQTAISDNYKTMSDTTFKALDDN 771
++++ +++ + S E T K FV+ + E+ + ++ T S +T+KA DD+
Sbjct: 350 IEILDDRKLDIARLYSDEFGTIKFFVKPSQNEESGMDSDTYLSFGTKSSSTYKADDDS 407
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 709 TAISDNYKTMSDTTFKALDD 768
T + D+ KT+ +T+F++LDD
Sbjct: 440 TCLDDHEKTLRETSFRSLDD 459
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 203 VYTHHRPQRTWWRKVFRSRSKCSFRYDHLRKEASEYEPYE 322
+Y R R WR +S + RY RK S YEP E
Sbjct: 550 IYMAMRTGRHLWRVAKKSEDEYYSRYLMDRKNESGYEPIE 589
>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 418
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 290 RKEASEYEPYEPDRAAEPWRAA 355
R+EAS++ + D +AE WRAA
Sbjct: 317 RREASKFGGFAADVSAERWRAA 338
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 102 LLNNDTLLKEGASGAFAQYNKDQLTPVR 185
+L N++ SG+F+Q QLTP+R
Sbjct: 190 ILRNESFQTPSFSGSFSQTGTYQLTPIR 217
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 560 VPRNSVAGPPTVKDHTEPTDRSNSSWVETGDLR 462
VP + +AG TVK+ E ++ S W ++ D R
Sbjct: 76 VPLDIIAGDNTVKEDEEASNEIPSIWEDSDDER 108
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 191 FETYGR-ELILVVLSEGSTSTFLEQGIVIQQHPHIIENSLNSPGGECKMKSE 39
+ +GR + +L EG TS E +QQH + IEN L + +C+ E
Sbjct: 433 YTIFGRLQNVLHDFVEGETSISKES---LQQHKNTIENQLAAANWDCQKIDE 481
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/58 (22%), Positives = 33/58 (56%)
Frame = +1
Query: 595 NVQLVSSKEIKAPLVASGEVATAKEFVRLVSDAENTYQTAISDNYKTMSDTTFKALDD 768
+++ VS++E +A A ++ + S+ E +QT +++ ++ +S+ + +A DD
Sbjct: 129 HLRAVSTEEAQA-FAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDD 185
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 392 SVQPRTPLAPHQVPPAKAQP 333
+VQ ++PL P + PP KA P
Sbjct: 6 AVQSKSPLLPKENPPVKAFP 25
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 414 WWVAQSTLVRYSWSP 458
WWV VR+ WSP
Sbjct: 413 WWVPYLEYVRFMWSP 427
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,246,248
Number of Sequences: 5004
Number of extensions: 68720
Number of successful extensions: 270
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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