Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00541
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0068 - 13021090-13021197,13021319-13021354,13022245-130223...    36   0.037
01_06_1568 - 38299113-38299790,38300165-38300254,38300368-383004...    29   4.2  
01_06_1012 - 33806190-33807875,33807963-33808331                       29   4.2  
07_01_0071 - 522920-523063,524125-524212,524289-524677                 28   7.4  
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570...    28   9.7  
03_02_0578 + 9603118-9605633,9605766-9605781                           28   9.7  
02_02_0501 - 10999203-10999754,11000724-11001460,11001461-110018...    28   9.7  

>07_03_0068 -
           13021090-13021197,13021319-13021354,13022245-13022322,
           13022412-13022514,13022732-13022817,13023036-13023090,
           13023186-13023250,13023997-13024086,13024415-13024530,
           13024701-13024710
          Length = 248

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = +1

Query: 511 SVWSLTV--GGPATELRGTLRVQVHYYEDGNVQLVSSKEIK 627
           S+W+L    G    E++G ++V  HY+E+GNVQL ++ + K
Sbjct: 155 SIWTLEFIDGLQLVEIKGKIQVGAHYFEEGNVQLDTNIDCK 195



 Score = 35.5 bits (78), Expect = 0.049
 Identities = 20/82 (24%), Positives = 39/82 (47%)
 Frame = +3

Query: 87  NDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRLEGSELYTLITDHNELGGGRFFDLAPS 266
           +DVR LL ++ + +  A+ AF ++NK  L  + L       +IT + EL    + D   +
Sbjct: 3   DDVRALLGDEAVYEAAAAEAFPEHNKAHLVALELPDRSGDIIITTYGELDKNNYLDPRTA 62

Query: 267 VLSGMTIYAKKRPSMNPTSPIE 332
            ++ +    +K   + P +  E
Sbjct: 63  QVATVDHIKQKCTKLRPAADEE 84


>01_06_1568 -
           38299113-38299790,38300165-38300254,38300368-38300484,
           38300600-38300962
          Length = 415

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/72 (29%), Positives = 27/72 (37%)
 Frame = -1

Query: 386 QPRTPLAPHQVPPAKAQPLDRARRVHTRTLLCVDGHT*KNTWSEIEKPSATKFVVVGDEC 207
           +PR P AP   P A A+  D ARR          G        E    SA +    G+  
Sbjct: 274 RPRLPAAPPATPAADAERADAARRGDAVPEAAGGGAEAVGEREEDAGGSAEEHEGAGEGA 333

Query: 206 IQLGAFETYGRE 171
           ++ GA    G E
Sbjct: 334 VEAGALAVVGEE 345


>01_06_1012 - 33806190-33807875,33807963-33808331
          Length = 684

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +3

Query: 180 VRLEGSELYTLIT-DHNELGGGRFFDLAPSVLSGMTIYAKKRPSMNPTSPIERLSLGGRH 356
           + L G +  T  + + NEL       L   V   M ++AK RP  +  +P   + L G  
Sbjct: 94  LHLGGQDTITAFSIEDNELWKRHLLSLLSQVALAMYVFAKSRPGADILAPAVFMFLSG-- 151

Query: 357 LMRS*RRTW 383
           +++   RTW
Sbjct: 152 ILKYGERTW 160


>07_01_0071 - 522920-523063,524125-524212,524289-524677
          Length = 206

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 783 GSQVVVVKCFERCVAHGLV 727
           G +VVVV+C E C++ GLV
Sbjct: 35  GQRVVVVRCEEMCISGGLV 53


>03_02_0719 +
           10654842-10654977,10655039-10655124,10655226-10657001,
           10657782-10657926,10658017-10658735
          Length = 953

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 566 RRVPRNSVAGPPTVKDHTEPTDRSNSSWVETGD 468
           + +P+N ++ PP+V    + TD  +SS ++  D
Sbjct: 726 KNMPKNFLSNPPSVDAEAKTTDSVSSSSIDASD 758


>03_02_0578 + 9603118-9605633,9605766-9605781
          Length = 843

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = +2

Query: 278 YDHLRKEASEYEPYEPDRAAEPWRAALDEELTAYVAAHYKH--GASLVVGRTVDSGTVQL 451
           Y+++ K       Y  D    PW+  L+  + A    HY H   A  ++ R V S  + L
Sbjct: 582 YEYMAKGTLRSHLYGSDLPPLPWKQRLEACIGAARGLHYLHTGSAKAIIHRDVKSANILL 641


>02_02_0501 -
           10999203-10999754,11000724-11001460,11001461-11001836,
           11001917-11001946,11002718-11002912,11003604-11004149
          Length = 811

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 409 FSGGSHSRLWYGTA--GRLYRRSPVSTQELLERSVGSVWS 522
           FS G  ++L YG +  G+++  +    QE +ER +G  WS
Sbjct: 230 FSDGQTTQLTYGASESGKIHGLAEYIAQEEMERKMGFWWS 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,267,500
Number of Sequences: 37544
Number of extensions: 493576
Number of successful extensions: 1576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1576
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)