Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00541
(788 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5336| Best HMM Match : F-actin_cap_A (HMM E-Value=7.5e-12) 71 1e-12
SB_29934| Best HMM Match : Vicilin_N (HMM E-Value=1.4) 29 3.2
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031) 29 3.2
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 29 4.3
SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2) 29 5.7
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 5.7
SB_50360| Best HMM Match : efhand (HMM E-Value=2.5e-05) 28 7.5
SB_33537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_2198| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_5336| Best HMM Match : F-actin_cap_A (HMM E-Value=7.5e-12)
Length = 225
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/56 (58%), Positives = 40/56 (71%)
Frame = +3
Query: 87 NDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRLEGSELYTLITDHNELGGGRFFD 254
NDVR+LL+NDTLLKE A+ +F+ YNK+Q TP +L G E LIT H EL G F D
Sbjct: 34 NDVRILLDNDTLLKERAASSFSDYNKEQFTPAKLSGDE-QVLITRHGELSDGSFID 88
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = +1
Query: 1 DEVISDQEKVRIVSDFILHSPPGEFNE 81
DE ISD EK+RI SDFI H+PPGEFNE
Sbjct: 5 DEPISDDEKIRIASDFIKHAPPGEFNE 31
Score = 35.1 bits (77), Expect(2) = 0.003
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +2
Query: 413 VVGRTVDSGTVQLVACIEDHQFQPKNY 493
V G + D G + +VAC+EDH+F+P+N+
Sbjct: 103 VYGSSTD-GLITIVACLEDHKFEPQNF 128
Score = 23.4 bits (48), Expect(2) = 0.003
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 257 RSKCSFRYDHLRK 295
+SK F YDHLRK
Sbjct: 90 KSKQKFSYDHLRK 102
>SB_29934| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
Length = 290
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 218 RPQRTWWRKVFRSRSKCSFR-YDHLRKEASEYEPYE 322
RP+ TW R V R R + +R +D +R +A++ E ++
Sbjct: 240 RPKTTWRRTVERERGEAGWRNWDEVRSKAADREKWK 275
>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
Length = 1099
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 455 RPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAKAQPL 330
RP + Y PP+ H V + P+ HQ PPA +QPL
Sbjct: 174 RPPIIYHQ----PPVIVHRPAVVYHQPPIIFHQPPPAVSQPL 211
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 182 TSRRLRAVYTHHRPQRTWWRKVFRSR--SKCSFRYDHLRKEA 301
+S L AV+ +P +W ++SR S C RY ++KEA
Sbjct: 687 SSYGLGAVFEQQQPDLSWRPVAYQSRALSSCEQRYAQIKKEA 728
>SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2)
Length = 356
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -1
Query: 482 VETGDLRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAKAQPL 330
V + RPA+ Y PP+ H + + P+ HQ PP QP+
Sbjct: 173 VHRAPIMLHRPAIIYHQ----PPVVVHRPAIIYHQPPIVFHQPPPVVNQPI 219
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -1
Query: 482 VETGDLRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAKAQPL 330
V + RP + Y PP+ H V + P+ HQ PPA QP+
Sbjct: 42 VHRAPILIHRPPIVYHQ----PPVVVHRPAVVYHQPPIVFHQPPPAVNQPM 88
>SB_50360| Best HMM Match : efhand (HMM E-Value=2.5e-05)
Length = 363
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 149 RSIQQGSTHARTSRRLRAVYTHHRPQRTWWRKVFRSRSKCSFR 277
RS H+ + R R V +H +R + RKVF C+F+
Sbjct: 208 RSFSPTRRHSFDALRFRRVLSHRVKKREFHRKVFDLHVTCAFK 250
>SB_33537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 478 STQELLERSVGSVWSLTVGGPATELRGTLRVQVHYYEDGNVQLVSSKEI 624
+++ + R+ + LT+ G LRG+L Q + E GNV LV + EI
Sbjct: 41 ASRNVFSRNPQKAYHLTLAGSVLHLRGSLTRQPYETEGGNV-LVWNGEI 88
>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 468 SSIQATSCTVPESTVRPTTKLAP 400
S++ TS P STV PTT +AP
Sbjct: 183 STVVPTSTVEPTSTVEPTTMMAP 205
>SB_2198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 962
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Frame = +2
Query: 161 QGSTHARTSRRLRAVYTHHRPQRT------WWRKV---FRSRSKCSFRYDHLRKEA 301
QG+ + T RLRA++ +P+ T W V RS S C RY KEA
Sbjct: 689 QGNPLSATEDRLRAIFGAEKPKTTKQRQEGGWTPVSHASRSLSDCERRYSQTEKEA 744
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,347,333
Number of Sequences: 59808
Number of extensions: 558356
Number of successful extensions: 2824
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2807
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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