Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00541
(788 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z18853-1|CAA79305.1| 282|Caenorhabditis elegans capping protein... 82 5e-16
Z18805-1|CAA79269.1| 282|Caenorhabditis elegans capping protein... 82 5e-16
U41011-3|AAA82286.1| 282|Caenorhabditis elegans Cap-z protein p... 82 5e-16
Z82274-16|CAC70096.1| 1119|Caenorhabditis elegans Hypothetical p... 30 1.6
Z82274-15|CAB05234.2| 1113|Caenorhabditis elegans Hypothetical p... 30 1.6
AL132951-13|CAC70127.1| 1119|Caenorhabditis elegans Hypothetical... 30 1.6
AL132951-12|CAC44311.1| 1113|Caenorhabditis elegans Hypothetical... 30 1.6
AF283323-1|AAG18575.1| 1113|Caenorhabditis elegans synaptojanin ... 30 1.6
AF283322-1|AAG18574.1| 1119|Caenorhabditis elegans synaptojanin ... 30 1.6
Z83103-9|CAI79157.1| 376|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z99281-48|CAE18025.2| 661|Caenorhabditis elegans Hypothetical p... 28 8.8
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 28 8.8
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 28 8.8
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 28 8.8
>Z18853-1|CAA79305.1| 282|Caenorhabditis elegans capping protein
alpha subunit protein.
Length = 282
Score = 81.8 bits (193), Expect = 5e-16
Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Frame = +1
Query: 511 SVWSLTVG---GPATELRGTLRVQVHYYEDGNVQLVSSKEIKAPLVASGEV-ATAKEFVR 678
S W++ VG + E++G + QVHYYEDGNVQL S KE + S + TAKE +
Sbjct: 169 SEWNVPVGDGKSGSQEMKGKILSQVHYYEDGNVQLFSEKEPVLKVNVSADFDKTAKEIIH 228
Query: 679 LVSDAENTYQTAISDNYKTMSDTTFKAL 762
+S+ E YQ A+ +NY MSDTTFKAL
Sbjct: 229 AISEEETIYQNAVQENYANMSDTTFKAL 256
Score = 79.4 bits (187), Expect = 3e-15
Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +2
Query: 260 SKCSFRYDHLRKEASEYEPYEPDRA-AEPWRAALDEELTAYVAAHY-KHGASLVVGRTVD 433
SK SF+YDH+RKEA++ +P+ + E WR AL +L Y+ HY K G +V R
Sbjct: 88 SKKSFKYDHVRKEAADLQPHPAESGITEQWRQALQTQLDIYIDDHYAKSGTGVVFAR--- 144
Query: 434 SGTVQLVACIEDHQFQPKNYWNGRW 508
+G + CIE HQFQPKN+ NGRW
Sbjct: 145 NGVFTI--CIESHQFQPKNFCNGRW 167
Score = 66.1 bits (154), Expect = 3e-11
Identities = 31/56 (55%), Positives = 37/56 (66%)
Frame = +3
Query: 87 NDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRLEGSELYTLITDHNELGGGRFFD 254
N VR+LL ND LLK A AQYN Q PV+L+G TLIT +N+LG GRF+D
Sbjct: 30 NSVRMLLENDDLLKNKCVNAIAQYNVGQFVPVKLDGVAKQTLITPYNDLGNGRFYD 85
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = +1
Query: 10 ISDQEKVRIVSDFILHSPPGEFNE 81
ISD EKVRI SDFI H+PPGEFNE
Sbjct: 4 ISDAEKVRIASDFIKHAPPGEFNE 27
>Z18805-1|CAA79269.1| 282|Caenorhabditis elegans capping protein
alpha subunit protein.
Length = 282
Score = 81.8 bits (193), Expect = 5e-16
Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Frame = +1
Query: 511 SVWSLTVG---GPATELRGTLRVQVHYYEDGNVQLVSSKEIKAPLVASGEV-ATAKEFVR 678
S W++ VG + E++G + QVHYYEDGNVQL S KE + S + TAKE +
Sbjct: 169 SEWNVPVGDGKSGSQEMKGKILSQVHYYEDGNVQLFSEKEPVLKVNVSADFDKTAKEIIH 228
Query: 679 LVSDAENTYQTAISDNYKTMSDTTFKAL 762
+S+ E YQ A+ +NY MSDTTFKAL
Sbjct: 229 AISEEETIYQNAVQENYANMSDTTFKAL 256
Score = 79.4 bits (187), Expect = 3e-15
Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +2
Query: 260 SKCSFRYDHLRKEASEYEPYEPDRA-AEPWRAALDEELTAYVAAHY-KHGASLVVGRTVD 433
SK SF+YDH+RKEA++ +P+ + E WR AL +L Y+ HY K G +V R
Sbjct: 88 SKKSFKYDHVRKEAADLQPHPAESGITEQWRQALQTQLDIYIDDHYAKSGTGVVFAR--- 144
Query: 434 SGTVQLVACIEDHQFQPKNYWNGRW 508
+G + CIE HQFQPKN+ NGRW
Sbjct: 145 NGVFTI--CIESHQFQPKNFCNGRW 167
Score = 66.1 bits (154), Expect = 3e-11
Identities = 31/56 (55%), Positives = 37/56 (66%)
Frame = +3
Query: 87 NDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRLEGSELYTLITDHNELGGGRFFD 254
N VR+LL ND LLK A AQYN Q PV+L+G TLIT +N+LG GRF+D
Sbjct: 30 NSVRMLLENDDLLKNKCVNAIAQYNVGQFVPVKLDGVAKQTLITPYNDLGNGRFYD 85
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = +1
Query: 10 ISDQEKVRIVSDFILHSPPGEFNE 81
ISD EKVRI SDFI H+PPGEFNE
Sbjct: 4 ISDAEKVRIASDFIKHAPPGEFNE 27
>U41011-3|AAA82286.1| 282|Caenorhabditis elegans Cap-z protein
protein 1 protein.
Length = 282
Score = 81.8 bits (193), Expect = 5e-16
Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Frame = +1
Query: 511 SVWSLTVG---GPATELRGTLRVQVHYYEDGNVQLVSSKEIKAPLVASGEV-ATAKEFVR 678
S W++ VG + E++G + QVHYYEDGNVQL S KE + S + TAKE +
Sbjct: 169 SEWNVPVGDGKSGSQEMKGKILSQVHYYEDGNVQLFSEKEPVLKVNVSADFDKTAKEIIH 228
Query: 679 LVSDAENTYQTAISDNYKTMSDTTFKAL 762
+S+ E YQ A+ +NY MSDTTFKAL
Sbjct: 229 AISEEETIYQNAVQENYANMSDTTFKAL 256
Score = 79.4 bits (187), Expect = 3e-15
Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +2
Query: 260 SKCSFRYDHLRKEASEYEPYEPDRA-AEPWRAALDEELTAYVAAHY-KHGASLVVGRTVD 433
SK SF+YDH+RKEA++ +P+ + E WR AL +L Y+ HY K G +V R
Sbjct: 88 SKKSFKYDHVRKEAADLQPHPAESGITEQWRQALQTQLDIYIDDHYAKSGTGVVFAR--- 144
Query: 434 SGTVQLVACIEDHQFQPKNYWNGRW 508
+G + CIE HQFQPKN+ NGRW
Sbjct: 145 NGVFTI--CIESHQFQPKNFCNGRW 167
Score = 66.1 bits (154), Expect = 3e-11
Identities = 31/56 (55%), Positives = 37/56 (66%)
Frame = +3
Query: 87 NDVRVLLNNDTLLKEGASGAFAQYNKDQLTPVRLEGSELYTLITDHNELGGGRFFD 254
N VR+LL ND LLK A AQYN Q PV+L+G TLIT +N+LG GRF+D
Sbjct: 30 NSVRMLLENDDLLKNKCVNAIAQYNVGQFVPVKLDGVAKQTLITPYNDLGNGRFYD 85
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = +1
Query: 10 ISDQEKVRIVSDFILHSPPGEFNE 81
ISD EKVRI SDFI H+PPGEFNE
Sbjct: 4 ISDAEKVRIASDFIKHAPPGEFNE 27
>Z82274-16|CAC70096.1| 1119|Caenorhabditis elegans Hypothetical
protein JC8.10b protein.
Length = 1119
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/72 (30%), Positives = 27/72 (37%)
Frame = -1
Query: 533 PTVKDHTEPTDRSNSSWVETGDLRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQV 354
P V + PT S++S + + P P QS P AC P T AP
Sbjct: 1019 PNVLSTSMPTRASSASLANSSWYEHVPPLAPPQSNNNKSP---PQACLFNPFTQSAPSPA 1075
Query: 353 PPAKAQPLDRAR 318
PP PL R
Sbjct: 1076 PPPSTIPLPPTR 1087
>Z82274-15|CAB05234.2| 1113|Caenorhabditis elegans Hypothetical
protein JC8.10a protein.
Length = 1113
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/72 (30%), Positives = 27/72 (37%)
Frame = -1
Query: 533 PTVKDHTEPTDRSNSSWVETGDLRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQV 354
P V + PT S++S + + P P QS P AC P T AP
Sbjct: 1013 PNVLSTSMPTRASSASLANSSWYEHVPPLAPPQSNNNKSP---PQACLFNPFTQSAPSPA 1069
Query: 353 PPAKAQPLDRAR 318
PP PL R
Sbjct: 1070 PPPSTIPLPPTR 1081
>AL132951-13|CAC70127.1| 1119|Caenorhabditis elegans Hypothetical
protein JC8.10b protein.
Length = 1119
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/72 (30%), Positives = 27/72 (37%)
Frame = -1
Query: 533 PTVKDHTEPTDRSNSSWVETGDLRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQV 354
P V + PT S++S + + P P QS P AC P T AP
Sbjct: 1019 PNVLSTSMPTRASSASLANSSWYEHVPPLAPPQSNNNKSP---PQACLFNPFTQSAPSPA 1075
Query: 353 PPAKAQPLDRAR 318
PP PL R
Sbjct: 1076 PPPSTIPLPPTR 1087
>AL132951-12|CAC44311.1| 1113|Caenorhabditis elegans Hypothetical
protein JC8.10a protein.
Length = 1113
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/72 (30%), Positives = 27/72 (37%)
Frame = -1
Query: 533 PTVKDHTEPTDRSNSSWVETGDLRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQV 354
P V + PT S++S + + P P QS P AC P T AP
Sbjct: 1013 PNVLSTSMPTRASSASLANSSWYEHVPPLAPPQSNNNKSP---PQACLFNPFTQSAPSPA 1069
Query: 353 PPAKAQPLDRAR 318
PP PL R
Sbjct: 1070 PPPSTIPLPPTR 1081
>AF283323-1|AAG18575.1| 1113|Caenorhabditis elegans synaptojanin
UNC-26B protein.
Length = 1113
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/72 (30%), Positives = 27/72 (37%)
Frame = -1
Query: 533 PTVKDHTEPTDRSNSSWVETGDLRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQV 354
P V + PT S++S + + P P QS P AC P T AP
Sbjct: 1013 PNVLSTSMPTRASSASLANSSWYEHVPPLAPPQSNNNKSP---PQACLFNPFTQSAPSPA 1069
Query: 353 PPAKAQPLDRAR 318
PP PL R
Sbjct: 1070 PPPSTIPLPPTR 1081
>AF283322-1|AAG18574.1| 1119|Caenorhabditis elegans synaptojanin
UNC-26A protein.
Length = 1119
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/72 (30%), Positives = 27/72 (37%)
Frame = -1
Query: 533 PTVKDHTEPTDRSNSSWVETGDLRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQV 354
P V + PT S++S + + P P QS P AC P T AP
Sbjct: 1019 PNVLSTSMPTRASSASLANSSWYEHVPPLAPPQSNNNKSP---PQACLFNPFTQSAPSPA 1075
Query: 353 PPAKAQPLDRAR 318
PP PL R
Sbjct: 1076 PPPSTIPLPPTR 1087
>Z83103-9|CAI79157.1| 376|Caenorhabditis elegans Hypothetical
protein D1025.10 protein.
Length = 376
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 296 EASEYEPYEPDRAAEPWRAALDEELT 373
E E EP P+ + WR+ +DEELT
Sbjct: 80 EVPEREPSTPNNSRSNWRSDMDEELT 105
>Z99281-48|CAE18025.2| 661|Caenorhabditis elegans Hypothetical
protein Y57G11C.42 protein.
Length = 661
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/57 (35%), Positives = 23/57 (40%)
Frame = -1
Query: 500 RSNSSWVETGDLRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVPPAKAQPL 330
R S V GD Y P ++ + D P S P PL P Q PP A PL
Sbjct: 205 RPPESLVVIGD--YDEDEPPSENAVVDSPQP--FVTSPPPAQPLFPQQTPPPPASPL 257
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/69 (21%), Positives = 28/69 (40%)
Frame = -1
Query: 530 TVKDHTEPTDRSNSSWVETGDLRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVP 351
T +H+ + + + + R P P + N +H + R+P P VP
Sbjct: 911 TPSEHSNDILKESRPKLPASTIDLRTPTKPLGQNVTPTSTN-NHEIAQSTRSPALPPPVP 969
Query: 350 PAKAQPLDR 324
P +A P+ +
Sbjct: 970 PREAPPIPK 978
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/69 (21%), Positives = 28/69 (40%)
Frame = -1
Query: 530 TVKDHTEPTDRSNSSWVETGDLRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVP 351
T +H+ + + + + R P P + N +H + R+P P VP
Sbjct: 911 TPSEHSNDILKESRPKLPASTIDLRTPTKPLGQNVTPTSTN-NHEIAQSTRSPALPPPVP 969
Query: 350 PAKAQPLDR 324
P +A P+ +
Sbjct: 970 PREAPPIPK 978
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/69 (21%), Positives = 28/69 (40%)
Frame = -1
Query: 530 TVKDHTEPTDRSNSSWVETGDLRYRRPAVPYQSRLCDPPLN*HHACSVQPRTPLAPHQVP 351
T +H+ + + + + R P P + N +H + R+P P VP
Sbjct: 911 TPSEHSNDILKESRPKLPASTIDLRTPTKPLGQNVTPTSTN-NHEIAQSTRSPALPPPVP 969
Query: 350 PAKAQPLDR 324
P +A P+ +
Sbjct: 970 PREAPPIPK 978
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,339,106
Number of Sequences: 27780
Number of extensions: 395048
Number of successful extensions: 1417
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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