Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00541
         (788 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05520.1 68416.m00605 F-actin capping protein alpha subunit f...    48   9e-06
At1g64540.1 68414.m07316 F-box family protein contains F-box dom...    38   0.010
At4g00710.1 68417.m00097 protein kinase family protein low simil...    30   2.0  
At1g74300.1 68414.m08604 esterase/lipase/thioesterase family pro...    29   3.5  
At3g28360.1 68416.m03544 ABC transporter family protein similar ...    28   6.1  
At3g07000.1 68416.m00831 DC1 domain-containing protein contains ...    28   6.1  
At2g34590.1 68415.m04250 transketolase family protein similar to...    28   8.1  
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ...    28   8.1  
At1g55390.1 68414.m06335 DC1 domain-containing protein similar t...    28   8.1  
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ...    28   8.1  
At1g30120.1 68414.m03681 pyruvate dehydrogenase E1 component bet...    28   8.1  

>At3g05520.1 68416.m00605 F-actin capping protein alpha subunit
           family protein contains Pfam profile: PF01267 F-actin
           capping protein alpha subunit
          Length = 308

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
 Frame = +1

Query: 475 VSTQELLERSVGSVWSLTVGGPAT--ELRGTLRVQVHYYEDGNVQLVSSKEIKAPLVASG 648
           +S Q     S  SVW++     +   +++G L+V  HY+E+GNV+L + K+ +   +   
Sbjct: 178 LSPQNFCNGSWRSVWNIDFQDESQVLDIKGKLQVGAHYFEEGNVELDAKKDFQDSTIFQS 237

Query: 649 EVATAKEFVRLVSDAENTYQTAISDNYKTMSDTTFKAL 762
               A     ++   E  Y  ++   Y  + D TFK L
Sbjct: 238 ADDCAIAIANIIRHHETEYLASLEVAYSKLPDNTFKDL 275



 Score = 36.3 bits (80), Expect = 0.023
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
 Frame = +2

Query: 281 DHLRKEASEYEPYE----PDRAAEPWRAALDEELTAYVAAHYKHGAS---LVVGRTVD-- 433
           DH+++  ++  P      P    E +R ALD E+  YV+  Y  G S    V G+  +  
Sbjct: 104 DHVKQICTKVRPANDEELPSLYIEEYRYALDAEIQRYVSESYPKGMSAVNCVKGKDNEGP 163

Query: 434 SGTVQLVACIEDHQFQPKNYWNGRW 508
               +LV  I   +  P+N+ NG W
Sbjct: 164 GSDFELVVIITAMRLSPQNFCNGSW 188


>At1g64540.1 68414.m07316 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 444

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = +3

Query: 249 FDLAPSVLSGMTIYAKKRPSMNPTSPIERLSLGGRHLMRS*RRTWLHT 392
           FDL  S  SG + + ++  +   T PI+RLSL GRH   S   +W+ T
Sbjct: 47  FDLEDSSTSGFSAFLEQTVARLNTCPIKRLSLNGRHYRFSSADSWIST 94


>At4g00710.1 68417.m00097 protein kinase family protein low
           similarity to protein kinase [Arabidopsis thaliana]
           GI:2852449; contains Pfam profile: PF00069 Protein
           kinase domain
          Length = 489

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
 Frame = -1

Query: 371 LAPHQVPPAKAQPLDRARRVHTRTLLCVDGHT*KNTWSEIEKPSATKFVVVGDECIQLGA 192
           L+   +PP+ A  L R R + T T  C+DG        +      T+ V +   C+Q  A
Sbjct: 245 LSGKHIPPSHALDLIRDRNLQTLTDSCLDG--------QFSDSDGTELVRLASRCLQYEA 296

Query: 191 FETYGRELILVVLSEGSTSTFLEQGIVIQQHPHIIENSLNSPGGE-CKMKSETIL 30
            E    + ++  L+     T +    V+   PH    S  SP GE C  +  T +
Sbjct: 297 RERPNTKSLVTALTPLQKETEV-LSHVLMGLPHSGSVSPLSPLGEACSRRDLTAM 350


>At1g74300.1 68414.m08604 esterase/lipase/thioesterase family
           protein low similarity to
           2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
           [Rhodococcus sp. RHA1] GI:8978311; contains Interpro
           entry IPR000379
          Length = 346

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +3

Query: 105 LNNDTLLKEGASGAFAQYNKDQLTPVRLEG--SELYTLITDHNELGGGRFFDLAPSVL 272
           L N  L +EG+   + Q ++D L PV L+   ++    +  H   GGG FF LA  V+
Sbjct: 280 LENPFLNREGSVHLW-QGDEDMLVPVTLQRYIADKLPWLHYHEVAGGGHFFPLAKGVV 336


>At3g28360.1 68416.m03544 ABC transporter family protein similar to
            P-glycoprotein homologue GI:2292907 from [Hordeum vulgare
            subsp. vulgare]
          Length = 1158

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +1

Query: 499  RSVGSVWSLTVGGPATELRGTLRVQVHYYEDGNVQLVSSKEIKAPLVASGEVATAKEFVR 678
            RS+    SL    P T   GT+R  + Y         S+K  ++ ++ +G+ A A EF+ 
Sbjct: 983  RSLRQHMSLVSQEP-TLFAGTIRENIMYGR------ASNKIDESEIIEAGKTANAHEFIT 1035

Query: 679  LVSDAENTY 705
             +SD  +TY
Sbjct: 1036 SLSDGYDTY 1044


>At3g07000.1 68416.m00831 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 574

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 260 SKCSFRYDHLRKEASEYEPYEPDRAAEPWRAALDEELTAYVAAHYKHGASL 412
           SKC+ R D    E  E  P E +   +P++   D+E+  +   H +H   L
Sbjct: 228 SKCAIREDVWNGEELEDVPEEEEEIEDPYKVVNDKEIIHF--CHEEHNLRL 276


>At2g34590.1 68415.m04250 transketolase family protein similar to
           SP|O66113 Pyruvate dehydrogenase E1 component, beta
           subunit (EC 1.2.4.1). {Zymomonas mobilis}; contains Pfam
           profiles PF02779: Transketolase, pyridine binding
           domain, PF02780: Transketolase, C-terminal domain
          Length = 406

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +1

Query: 523 LTVGGPATELRGTLRVQVHYYEDGNVQLVSSKEIKAPLVASGEVATAKEFVRLVSDAENT 702
           +  GG    L   +    H Y D  V  +SS+++  P   + E  T  +  ++V+  E  
Sbjct: 345 MRTGGIGASLTAAINENFHDYLDAPVMCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 404

Query: 703 YQ 708
            Q
Sbjct: 405 CQ 406


>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 725

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 260 SKCSFRYDHLRKEASEYEPYEPDRAAEPWRAALDEELTAYVAAHY 394
           SKC+ R D    +  +  P EPD   EP    +DEE   + + H+
Sbjct: 343 SKCATRNDVWDGKDLDGVPEEPDEFIEPPFLKIDEETIQHFSHHH 387


>At1g55390.1 68414.m06335 DC1 domain-containing protein similar to
           hypothetical protein GI:4204272 from [Arabidopsis
           thaliana] contains weak PHD zinc finger motifs contains
           weak PHD zinc finger motifs DC1 domain, a divergent
           protein kinase C domain of unknown function.
          Length = 684

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +2

Query: 260 SKCSFRYDHLRKEASEYEPYEPDRAAEPWRAALDEELTAYVAAHYKHGASLVVGRTVDSG 439
           SKC+ R D    +  E  P +PD   EP+   +DEE T    +H++H   L    T+   
Sbjct: 346 SKCATREDVWDGKDLEGVPEKPDEDIEPF-VRIDEE-TIQHFSHHEHYMKLHEKETISEK 403

Query: 440 TVQLVAC 460
                AC
Sbjct: 404 DKFCEAC 410


>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 260 SKCSFRYDHLRKEASEYEPYEPDRAAEPWRAALDEELTAYVAAHY 394
           SKC+ R D    +  +  P EPD   EP    +DEE   + + H+
Sbjct: 304 SKCATRNDVWDGKDLDGVPEEPDEFIEPPFLKIDEETIQHFSHHH 348


>At1g30120.1 68414.m03681 pyruvate dehydrogenase E1 component beta
           subunit, chloroplast identical to pyruvate dehydrogenase
           E1 beta subunit [Arabidopsis thaliana] GI:2454184;
           identical to cDNA pyruvate dehydrogenase E1 beta subunit
           mRNA, nuclear gene encoding plastid protein GI:2454183
          Length = 406

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +1

Query: 523 LTVGGPATELRGTLRVQVHYYEDGNVQLVSSKEIKAPLVASGEVATAKEFVRLVSDAENT 702
           +  GG    L   +    H Y D  V  +SS+++  P   + E  T  +  ++V+  E  
Sbjct: 345 MRTGGIGASLTAAINENFHDYLDAPVMCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 404

Query: 703 YQ 708
            Q
Sbjct: 405 CQ 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,334,377
Number of Sequences: 28952
Number of extensions: 372251
Number of successful extensions: 1151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)