Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00540
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   1.2  
SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro...    25   4.9  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   6.5  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   6.5  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    25   8.6  

>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 18/35 (51%), Positives = 21/35 (60%)
 Frame = -2

Query: 353 RQPQSQPALLFLRSIISKFVNAKRSIWILLVQLFI 249
           R  ++Q ALL L  I SKF N   + W LLVQL I
Sbjct: 866 RDFRAQLALLVLFWISSKFGNIIDASWPLLVQLTI 900


>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
           protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +2

Query: 119 LRDIMTSIKPKNCSKFSSKNITGNTRMMPTESCIINHSRNTWQR*TIEREESIYY 283
           L+ + TS  PK+C +  S      T     +  ++++ +NT  + +I R+ + Y+
Sbjct: 94  LKPVATST-PKSCMRTGSNLFLNETVKHVPDERLVSNIKNTQTKDSITRDSAYYH 147


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 148  KELFEIFVKEHNREYKDDADRELHYQSFKKHLAEINN 258
            ++++EI+ + +N  +  D  +EL      KH+ E+N+
Sbjct: 3426 QKIYEIYSERNN--FSRDDPKELFTNELSKHMMELNS 3460


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 329 LLFLRSIISKFVNAKRSIWILLVQLFISAKCF 234
           +L  R  +SKFV A  ++W +++ L  +A  F
Sbjct: 146 MLLQRFPVSKFVAASTALWTIIIFLHCAAYNF 177


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 119 LRDIMTSIKPKNCSKFSSKNITGNTRMMPTES 214
           L+D+ +S+K K  SK SS +    T  + TES
Sbjct: 76  LKDMFSSMKKKKKSKKSSASAEEQTEDITTES 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,015,004
Number of Sequences: 5004
Number of extensions: 38698
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)