Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00539
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.02 |||thioesterase superfamily protein|Schizosaccharom...    45   1e-05
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    27   1.6  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    27   2.1  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   3.7  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   4.9  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    25   8.5  

>SPBC31F10.02 |||thioesterase superfamily
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
 Frame = +2

Query: 254 LAHLVDAISTYALTTNENVDTRGVSIDLSLSFY-SAAKEGDNIEVEAKTRKTGKKIAFLE 430
           +A L D   + AL +   +   GVSID++ +F  S    G +I + AK  + G  IAF  
Sbjct: 67  IAALTDLGGSLALASR-GLFISGVSIDMNQTFLQSGGTLGSSILLHAKCDRLGSNIAFTS 125

Query: 431 VEVRNKDKNQVLASGRHTKYI 493
           V+      N+V A GRHTK++
Sbjct: 126 VDFLTSS-NEVFAKGRHTKFV 145



 Score = 33.1 bits (72), Expect = 0.032
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 78  GTKGIKIAELFTKTIAATKGFDQNL-RKLKVTSCGNGSMVTEFQVGPEHLNQRGTLHGG 251
           GTK +       +    T GFD ++   +++ S   G +    ++   HLN+ G LHGG
Sbjct: 7   GTKVLSFVRSVWQDFVNTNGFDAHVVSDIQIISAVPGFVECSLKLQKHHLNRMGNLHGG 65


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 308 VDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKK 415
           +  +G+    S    SA   GD++EVE +  K  K+
Sbjct: 268 ISKQGIKFKTSTKLLSAKVNGDSVEVEIENMKNNKR 303


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 359 AKEGDNIEVEAKTRKTGKKIAFLEVE-VRNKDKNQ 460
           AKE D+IEV+ K  KT  K    +VE   +KD N+
Sbjct: 496 AKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNE 530


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 396 LVKPEKKLHSSKLKFGTKTKIKSWLQADTPNILVFSAMYKN*FVN 530
           L +  KKLH  K K      I   L + +P  + F A+    F N
Sbjct: 665 LKRHAKKLHEKKTKSSQDATIDHHLTSHSPESIAFKAVLAKFFAN 709


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 302 ENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTR--KTGKKIAFLEVEVRNKDKNQVLASG 475
           E++D    SIDL +S  +A     N+         KT +K + +  E  N+D N + ++G
Sbjct: 123 ESMDIDMPSIDLDISNAAAFPRDSNLLFRNYNSHTKTSEKGSPVNFEKENQDSNVLFSTG 182

Query: 476 R 478
           R
Sbjct: 183 R 183


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 260 HLVDAISTYALTTNENVDTRGVSIDLSLSF 349
           H V + ST+ +  ++N+   G+++  SLS+
Sbjct: 142 HFVTSPSTFFIRYDDNITVAGINVQDSLSY 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,264
Number of Sequences: 5004
Number of extensions: 40019
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)