Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00539
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1010 - 21704225-21704368,21706407-21706550,21706661-21706834     62   3e-10
01_06_1566 + 38283781-38283909,38283985-38284128                       55   4e-08
07_03_0279 + 16211180-16211410,16211516-16211659,16212466-162125...    40   0.001
01_01_0910 + 7175107-7175319,7175448-7175588,7175696-7175866           37   0.014
02_04_0030 + 19041107-19041334,19041413-19041733                       32   0.30 
12_02_0289 - 16914975-16916238,16916246-16916484                       29   3.7  
07_03_0391 - 17587144-17587323,17587460-17587566,17587664-175877...    29   3.7  

>04_03_1010 - 21704225-21704368,21706407-21706550,21706661-21706834
          Length = 153

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 28/83 (33%), Positives = 48/83 (57%)
 Frame = +2

Query: 251 ILAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLE 430
           + A L D + +  +  +  + T GVS++L+LS+   A  G+ IEVE K  + GK +  + 
Sbjct: 68  VTATLADQLGS-GVFLSSGIGTSGVSLELNLSYVDVASIGEEIEVEGKLLRAGKSVGVVS 126

Query: 431 VEVRNKDKNQVLASGRHTKYIGI 499
           V+ R K   +++A  RHTKY+ +
Sbjct: 127 VDFRKKKTGKLIAQARHTKYLAV 149


>01_06_1566 + 38283781-38283909,38283985-38284128
          Length = 90

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 28/82 (34%), Positives = 48/82 (58%)
 Frame = +2

Query: 254 LAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEV 433
           +A LVD + +       +  T GV++++++S+  AA+  + IE+EA+    G+    + V
Sbjct: 6   VASLVDLVGSAVFFAGGSPKT-GVTVEITVSYLDAARANEEIEMEARVLGIGETTGCVTV 64

Query: 434 EVRNKDKNQVLASGRHTKYIGI 499
           EVR K   +VLA GR TKY+ +
Sbjct: 65  EVRRKGAGEVLAHGRITKYLAV 86


>07_03_0279 +
           16211180-16211410,16211516-16211659,16212466-16212597,
           16213478-16213591
          Length = 206

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 20/54 (37%), Positives = 31/54 (57%)
 Frame = +2

Query: 332 DLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTKYI 493
           +LS ++ SAA+    +EVEA+  + G+ +    VE R KD  ++  S R T YI
Sbjct: 113 ELSTAYLSAARLNSEVEVEAQILRKGRSVVVTTVEFRLKDTKKLCYSSRATIYI 166


>01_01_0910 + 7175107-7175319,7175448-7175588,7175696-7175866
          Length = 174

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 21/75 (28%), Positives = 38/75 (50%)
 Frame = +2

Query: 254 LAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEV 433
           +A  VD +    + T + V     +I  ++SF+S A  G+ +E++ +      K+    V
Sbjct: 82  MAAAVDNLCAAVVYTADGVHR--FTISQAMSFFSPAAHGEEVEMDGRVAHRKGKLTAAVV 139

Query: 434 EVRNKDKNQVLASGR 478
           EVR K   +++A GR
Sbjct: 140 EVRRKASGELVAIGR 154


>02_04_0030 + 19041107-19041334,19041413-19041733
          Length = 182

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
 Frame = +2

Query: 323 VSIDLSLSFYSAA--KEGDNIEVEAKTRKTGKKIAF--LEVEVRNKDKNQVLASGRHTKY 490
           VS D+S+SF S A  + GD + + A  R  G K A+    V + N    +V+A GRH+ +
Sbjct: 108 VSTDMSVSFVSLAQARPGDRLRITA--RALGHKGAYSATHVLISNAATGEVVAEGRHSLF 165


>12_02_0289 - 16914975-16916238,16916246-16916484
          Length = 500

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = +2

Query: 305 NVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIA-------FLEVEVRNKDKNQV 463
           N D R + +D +       ++ D IEVE  T + GKK A        + +  +N DK++V
Sbjct: 276 NADLRKLFLDTTDKSIIVIEDIDAIEVELTTNRKGKKAANGDDKHVVIGLSDKNHDKSKV 335

Query: 464 LASG 475
             SG
Sbjct: 336 TLSG 339


>07_03_0391 -
           17587144-17587323,17587460-17587566,17587664-17587742,
           17587850-17587939,17588337-17588588,17588748-17588894,
           17589071-17589246,17589303-17589394,17589582-17589673
          Length = 404

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 433 NFEECNFFSGFTSFGLYFNIVSFFGC 356
           NF+E  FF G  SF +YF   SF+ C
Sbjct: 144 NFQE--FFQGMVSFPIYFPGTSFYRC 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,977,520
Number of Sequences: 37544
Number of extensions: 232713
Number of successful extensions: 566
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)