Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00539
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38430| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   1e-10
SB_53116| Best HMM Match : Pkinase (HMM E-Value=1.9e-09)               31   0.95 
SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28)             30   1.3  
SB_14144| Best HMM Match : MFS_1 (HMM E-Value=0.047)                   30   1.7  
SB_42267| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=5.9e-12)          28   6.7  
SB_22508| Best HMM Match : DM (HMM E-Value=8.1e-10)                    27   8.8  
SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  

>SB_38430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 33/82 (40%), Positives = 49/82 (59%)
 Frame = +2

Query: 251 ILAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLE 430
           + A +VD ++T A+ +       GVS+D+++S+  AA  GD +  E    K GK +AF  
Sbjct: 60  LTATMVDDVTTMAIISQTG--QAGVSVDMNISYLKAACRGDEVIFEGICNKAGKNLAFST 117

Query: 431 VEVRNKDKNQVLASGRHTKYIG 496
            E++ KD   VLA G+HTKYIG
Sbjct: 118 AEIKLKD-GTVLAMGKHTKYIG 138



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +3

Query: 102 ELFTKTIAATKGFDQNLRKLKVTSCGNGSMVTEFQVGPEHLNQRGTLHGG 251
           +L+T       GFD+ L K ++ + G G  + +  V  EH N+ GTLHGG
Sbjct: 10  QLWTFMTKNNPGFDRVLEKAELAAFGGGRCIIKMTVSQEHENRMGTLHGG 59


>SB_53116| Best HMM Match : Pkinase (HMM E-Value=1.9e-09)
          Length = 481

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 290 LTTNENVDTRGVSIDLSLSFYSAAKE-GDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVL 466
           + T  +V  R     L+ S ++  K    NI   +KT+   +    LE ++RNKD N  L
Sbjct: 363 VNTESSVSERNSKSSLATSTFAVPKMLFTNICSLSKTKNRVRAAVALEADLRNKDINICL 422

Query: 467 ASGRHTK 487
            S  H K
Sbjct: 423 VSETHLK 429


>SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28)
          Length = 552

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 269 DAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKT 406
           D +S     T  + DTR   +DL  + +S+ K+ ++ EV+ +T KT
Sbjct: 413 DQVSRRGALTGGHYDTRKSRLDLQRTIWSSGKKVEDEEVQLQTIKT 458


>SB_14144| Best HMM Match : MFS_1 (HMM E-Value=0.047)
          Length = 355

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -3

Query: 142 SKPLVAAIVFVNSSAIFIPLVPMVNLFKYNNLSIDTRCN 26
           + PL    + V+SSAI IPL+      KYN L +DT+ N
Sbjct: 318 ASPLWMNWLLVSSSAICIPLIACFK-GKYNRLDVDTKEN 355


>SB_42267| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=5.9e-12)
          Length = 902

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/86 (24%), Positives = 39/86 (45%)
 Frame = +2

Query: 200 VPSGT*TLKSKRHTTWWILAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNI 379
           +  G   LKS +  + W+  + ++     AL T EN+DT    I+ + + Y+  K  +N 
Sbjct: 311 IGDGMNELKSWKMNSNWLSKNNINQEVVSALQTTENIDT---DIEEAENRYTKEKNVENE 367

Query: 380 EVEAKTRKTGKKIAFLEVEVRNKDKN 457
           E + + R        +  EV  ++ N
Sbjct: 368 EAQEEDRTLNSPPERIGEEVHVEEMN 393


>SB_22508| Best HMM Match : DM (HMM E-Value=8.1e-10)
          Length = 450

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -3

Query: 124 AIVFVNSSAIFIPLVPMVNLFKYNNLSIDTR 32
           A+ +VN + + +P +P   + +YN +++ TR
Sbjct: 397 ALNYVNDTIVLLPYIPPAFIAQYNAMALKTR 427


>SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1181

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 353 SAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTKYIG 496
           S A+ GD+     K+    +     E E+  K KN    SGRH+++ G
Sbjct: 444 SLARAGDSRSKSEKSEDVRQLETIRERELAEKKKNAKKFSGRHSRFGG 491


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,479,075
Number of Sequences: 59808
Number of extensions: 282651
Number of successful extensions: 707
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)