Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00539
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-15|AAN63449.1|  148|Caenorhabditis elegans Hypothetical p...    53   1e-07
U29535-16|AAN63448.1|  143|Caenorhabditis elegans Hypothetical p...    50   1e-06
L08403-2|AAA28024.2|  169|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z93375-3|CAB07565.3|  443|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF125960-3|AAD14737.1|  446|Caenorhabditis elegans Hypothetical ...    28   5.9  
U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine rece...    27   7.8  

>U29535-15|AAN63449.1|  148|Caenorhabditis elegans Hypothetical
           protein C25H3.3 protein.
          Length = 148

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 27/75 (36%), Positives = 46/75 (61%)
 Frame = +2

Query: 263 LVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVR 442
           L+D  +T AL   +     GVS+DL +++ +AAK G+ + +++   K GK +AF + E+ 
Sbjct: 66  LIDIFTTGALLLTKPARP-GVSVDLHVTYLTAAKIGETLVLDSTVIKQGKTLAFTKAELY 124

Query: 443 NKDKNQVLASGRHTK 487
            K  N ++A+G HTK
Sbjct: 125 RKSDNVMIATGVHTK 139


>U29535-16|AAN63448.1|  143|Caenorhabditis elegans Hypothetical
           protein C25H3.14 protein.
          Length = 143

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 25/77 (32%), Positives = 44/77 (57%)
 Frame = +2

Query: 257 AHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVE 436
           A L+D  +T AL   +     GVS+DL +++ +AA  G+ + + +   K G+ + F + E
Sbjct: 64  AALIDCFTTGALLLTKEARP-GVSVDLHITYLTAANIGETLVLNSTVIKQGRSLGFTKAE 122

Query: 437 VRNKDKNQVLASGRHTK 487
           +  K  N ++A+G HTK
Sbjct: 123 LYRKRDNAMIATGVHTK 139



 Score = 31.5 bits (68), Expect = 0.48
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 75  MGTKGIKIAELFTKTIAATK--GFDQNLRKLKVTSCGNGSMVTEFQVGPEHLNQRGTLHG 248
           M +K ++IA+   K        G+    R ++      G++  EF+V  +  NQ  TLHG
Sbjct: 1   MASKYMQIAKEVIKMFGTKGQFGYAAGARNVRAVHAEEGNLRVEFEVEKDQTNQFETLHG 60

Query: 249 G 251
           G
Sbjct: 61  G 61


>L08403-2|AAA28024.2|  169|Caenorhabditis elegans Hypothetical
           protein F42H10.6 protein.
          Length = 169

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 189 MVTEFQVGPEHLNQRGTLHGG 251
           +V E  V  +HLN +GTLHGG
Sbjct: 54  LVCEMVVQHQHLNSKGTLHGG 74


>Z93375-3|CAB07565.3|  443|Caenorhabditis elegans Hypothetical
           protein C38C6.5 protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 108 FTKTIAATKGFDQNLRKLKVTSCGNGSMVT 197
           F  ++     F +NL  LK  SC NGSMV+
Sbjct: 372 FFSSVDFLNRFTKNLNNLKTESCLNGSMVS 401


>AF125960-3|AAD14737.1|  446|Caenorhabditis elegans Hypothetical
           protein T12B3.1 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 174 CGNGSMVTEFQVGPEHLNQRGTLHGGF 254
           CG+G++ + F   PE+L + G  H  F
Sbjct: 118 CGSGNLTSGFSYDPENLMRNGIYHYNF 144


>U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 10 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 448 FVPNF--NFEECNFFSGFTSFGLYFNIVSFFGCTVET 344
           F+PN   N+     FS F + G Y  I+  FG  +ET
Sbjct: 240 FLPNSISNYAAQFEFSSFQNIGPYIYIIKLFGIAIET 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,824,286
Number of Sequences: 27780
Number of extensions: 228586
Number of successful extensions: 639
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)