Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00539
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   0.76 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   7.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   7.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.3  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 401 KTGKKIAFLEVEVRNKDKNQVLASGRHTKYI 493
           KTGKKI+ LE E+ N  K Q   +     Y+
Sbjct: 280 KTGKKISELEKEMLNGQKLQGPFTAEEVNYM 310


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 252 IHHVVCLFDLSVQVPLGTQSP 190
           I H++C+ DL  Q+P  + +P
Sbjct: 292 ICHILCMSDLHWQLPHNSTNP 312


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 408 EKKLHSSKLKFGTKTKIKSWLQADTPN 488
           E+KL  +K  FG +     W++    N
Sbjct: 23  EEKLEWTKYPFGAEANTPGWVEESFTN 49


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 439 NFNFEECNFFSGFTSFGLYFNIVS 368
           N+N++  N+ + + S  LY+NI++
Sbjct: 308 NYNYK--NYNNNYNSKKLYYNIIN 329


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 439 NFNFEECNFFSGFTSFGLYFNIVS 368
           N+N++  N+ + + S  LY+NI++
Sbjct: 319 NYNYK--NYNNNYNSKKLYYNIIN 340


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 264 KCARIHHVVCLFDLSVQVPLGTQS 193
           K  R H   CL  L V VPLG ++
Sbjct: 58  KNRRAHLRNCLEKLKVLVPLGPET 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,702
Number of Sequences: 438
Number of extensions: 2677
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)