Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00539
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04290.1 68414.m00420 thioesterase family protein contains Pf...    62   3e-10
At2g29590.1 68415.m03593 thioesterase family protein contains Pf...    44   8e-05
At3g16175.1 68416.m02042 thioesterase family protein contains Pf...    44   1e-04
At5g26710.1 68418.m03168 glutamate-tRNA ligase, putative / gluta...    28   4.1  
At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase...    27   7.2  
At5g09790.1 68418.m01133 PHD finger family protein / SET domain-...    27   9.6  

>At1g04290.1 68414.m00420 thioesterase family protein contains Pfam
           profile PF03061: thioesterase family protein; EST
           gb|T45093 comes from this gene
          Length = 155

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 30/78 (38%), Positives = 48/78 (61%)
 Frame = +2

Query: 257 AHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVE 436
           A LVD I +  + T       GVS+++++S+  AA   + IE+E+K  + GK +A + VE
Sbjct: 72  ATLVDLIGSAVIYT-AGASHSGVSVEINVSYLDAAFLDEEIEIESKALRVGKAVAVVSVE 130

Query: 437 VRNKDKNQVLASGRHTKY 490
           +R K   +++A GRHTKY
Sbjct: 131 LRKKTTGKIIAQGRHTKY 148


>At2g29590.1 68415.m03593 thioesterase family protein contains Pfam
           profile PF03061: thioesterase family protein
          Length = 158

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 26/79 (32%), Positives = 44/79 (55%)
 Frame = +2

Query: 254 LAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEV 433
           +A+LVD +   AL   E +    VS+D+S++F S AK G+ +E+ ++            V
Sbjct: 75  IANLVDEVGG-ALVHGEGLPM-SVSVDMSIAFLSKAKLGEELEITSRLLGERGGYKGTIV 132

Query: 434 EVRNKDKNQVLASGRHTKY 490
            VRNK   +++A GRH+ +
Sbjct: 133 VVRNKMTGEIIAEGRHSMF 151


>At3g16175.1 68416.m02042 thioesterase family protein contains Pfam
           profile PF03061: thioesterase family protein
          Length = 157

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/52 (32%), Positives = 33/52 (63%)
 Frame = +2

Query: 323 VSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGR 478
           +S+DL+ SFYS AK  + +E+EA+   +   +    +E+R +   +++A+GR
Sbjct: 86  ISVDLNSSFYSTAKIHETVEIEARVNGSNGGLKSAVIEIRRETSGEIIATGR 137


>At5g26710.1 68418.m03168 glutamate-tRNA ligase, putative /
           glutamyl-tRNA synthetase, putatuve / GluRS, putative
           identical to gi:3435196
          Length = 719

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 218 TLKSKRHTTWWILAHLVDAISTYALTTNENVDTRGVSIDLSLSF 349
           TL SKR   W++   LVD        T + +  RG+ I+  + F
Sbjct: 447 TLLSKRKLLWFVQTGLVDGWDDPRFPTVQGIVRRGLKIEALIQF 490


>At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK9) mitogen-activated protein
           kinase kinase (MAPKK) family, PMID:12119167
          Length = 310

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 111 TKTIAATKGFDQ-NLRKLKVTSCGNGSMV 194
           T T+A   G    +L KL V  CGNG +V
Sbjct: 33  TTTVAGCNGISACDLEKLNVLGCGNGGIV 61


>At5g09790.1 68418.m01133 PHD finger family protein / SET
           domain-containing protein contains Pfam domain, PF00628:
           PHD-finger and PF00856: SET domain
          Length = 352

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 264 KCARIHHVVCLFDLSVQVPLGT 199
           KC R  H+ CL  + V+VP+GT
Sbjct: 84  KCDRGFHMKCLRPIVVRVPIGT 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,940,969
Number of Sequences: 28952
Number of extensions: 201791
Number of successful extensions: 512
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)