Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00538
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    27   2.7  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    26   6.3  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   8.3  

>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -3

Query: 302 LPNMGLQDITIQLQNVPNLTHGTLP 228
           +P++GL+DI++Q+  VPN    TLP
Sbjct: 182 IPSLGLEDISMQV--VPNAFASTLP 204


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 312 GLHSTKHGLAGHHYSIAKRPEPNPRNPP 229
           G+ ST  G AG+H   +   + NP  PP
Sbjct: 137 GVKSTAKGSAGNHEKNSVNGQKNPEMPP 164


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 296  LVE*SPGGWWRCLKVGRTG 352
            +V+  P GWW  LK G  G
Sbjct: 1135 IVQKEPSGWWLALKNGAEG 1153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,373
Number of Sequences: 5004
Number of extensions: 60898
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)