Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00538
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0637 - 16465433-16466242                                         29   3.7  
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392...    29   3.7  
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037...    29   4.9  
10_06_0145 + 11215895-11216860                                         28   6.5  
01_04_0052 + 15435709-15436004,15437760-15438255,15439171-15439320     28   6.5  
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939...    28   8.6  
10_08_1027 - 22404169-22404807,22406148-22406360,22407062-224072...    28   8.6  
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696...    28   8.6  

>05_03_0637 - 16465433-16466242
          Length = 269

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 351 PVRPTFKQRHQPPGLHSTKHGLAGHHYSIAKRPEPNPRNPPM 226
           P+RP   +   PP LH   H    HH+ +  +P P P  PP+
Sbjct: 137 PLRPLLPR---PPHLHPAFHHQPFHHHLLQPQPPPPP--PPL 173


>03_01_0522 -
           3919120-3919696,3919835-3919919,3919955-3919985,
           3920078-3920158,3920271-3920338,3920645-3920698,
           3921023-3922379
          Length = 750

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 22/64 (34%), Positives = 26/64 (40%)
 Frame = -1

Query: 634 TIPFEQTFRDLSAQGNDPRRNDLTTFNYCGCGWPQHMLVPKGLKPACPSNCSLCYPTMI* 455
           T+P     +  SA G  P       F+ CG      ML P   +P CPS  SL   T   
Sbjct: 597 TLPPPPPTQQPSAFGTLPPPRPSQQFSACGT-----MLPPSSSQPFCPSVRSLAMQTFAT 651

Query: 454 PGSI 443
           PG I
Sbjct: 652 PGPI 655


>04_04_0233 +
           23801944-23802598,23802914-23803047,23803548-23803730,
           23804145-23804318
          Length = 381

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 318 PPGLHSTKHGLAGHHYSIAKRPEPNPRNPP 229
           PP  H   H    H +S   +P+P P+ PP
Sbjct: 38  PPPPHHHHHHRRRHRHSKKPKPQPQPQPPP 67


>10_06_0145 + 11215895-11216860
          Length = 321

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -2

Query: 654 SRRSLP*LFRLNRHSA---TYPLRAMILDATTSLPSITAAAAGPST 526
           +R + P L R  RH A   +  + A IL ATT+  + TAAAA P++
Sbjct: 175 ARLNFPELRRGGRHHAPALSASVDAKILQATTTTTADTAAAAAPAS 220


>01_04_0052 + 15435709-15436004,15437760-15438255,15439171-15439320
          Length = 313

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 327 RHQPPGLHSTKHGLAGHHYSIAKRPEPNPRNPP 229
           R  PP L + +HG+   +Y    RP P    PP
Sbjct: 13  RPPPPHLEAYRHGVPPPYYHSYPRPPPGAAAPP 45


>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
            16794787-16796964,16797065-16797322,16799815-16800172
          Length = 1530

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 280  TSLFNCKTSRT*PTEPSHVSLKC 212
            TS+FN  +S T PT P+ V  KC
Sbjct: 1080 TSIFNSASSSTPPTSPTPVLAKC 1102


>10_08_1027 -
           22404169-22404807,22406148-22406360,22407062-22407255,
           22407422-22407566,22407801-22407875,22408222-22408380,
           22408466-22408645,22408756-22409243,22409375-22409738,
           22409811-22409943,22410023-22410153,22410247-22410354,
           22410451-22410897,22411425-22411514,22411607-22411915,
           22412209-22412320,22412488-22412699
          Length = 1332

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -3

Query: 404 SFCGLKDKKYPDRRAMGFPFDRPSSSATS---LQDFILPNMGLQDITIQLQNVP 252
           S   LK   YP     GF    P+S+AT    + D  LPN     +  +L +VP
Sbjct: 554 SVAELKSGAYPKDENYGFQHAMPASTATKISVIHDNGLPNTTHSSVDYELPHVP 607


>09_04_0308 +
           16567361-16568854,16568946-16569068,16569372-16569649,
           16570316-16571924,16572363-16573781
          Length = 1640

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 280 TSLFNCKTSRT*PTEPSHVSLKC 212
           TS+FN  +S T PT P+ V  KC
Sbjct: 647 TSIFNSASSSTPPTSPTPVLAKC 669


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,417,590
Number of Sequences: 37544
Number of extensions: 433242
Number of successful extensions: 1049
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)