Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00538
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51810.1 68418.m06424 gibberellin 20-oxidase, putative simila...    32   0.44 
At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putat...    28   5.5  
At2g31570.1 68415.m03857 glutathione peroxidase, putative              27   9.5  

>At5g51810.1 68418.m06424 gibberellin 20-oxidase, putative similar
           to gibberellin 20-oxidase GI:1109695, GI:9791186
          Length = 378

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 422 TCVEASSFCGLKDKKYPDRRAMGFPFDRPSSSATSLQDFILPNMG 288
           +C  ASSF G    K P +  + F F   +S + ++QD+    +G
Sbjct: 131 SCGYASSFTGRFSTKLPWKETLSFQFSNDNSGSRTVQDYFSDTLG 175


>At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putative
           / citrate hydro-lyase/aconitase, putative strong
           similarity to SP|P49608 Aconitate hydratase, cytoplasmic
           (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
           {Cucurbita maxima}; contains Pfam profiles PF00330:
           Aconitase family (aconitate hydratase), PF00694:
           Aconitase C-terminal domain
          Length = 995

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +2

Query: 398 RSSTLPHK*AVFHHLDRSGLNHSWIT--*RTV*RACRLQALGHEHVLGPAAAAVIEGSEV 571
           ++S  P    V  +LDRSGL  S        V   C    +G+   L P  A+ IEG+++
Sbjct: 569 KTSLAPGSRVVEKYLDRSGLRESLTKQGFEIVGYGC-TTCIGNSGNLDPEVASAIEGTDI 627

Query: 572 VASRIIA 592
           + + +++
Sbjct: 628 IPAAVLS 634


>At2g31570.1 68415.m03857 glutathione peroxidase, putative
          Length = 169

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 449 IDQDDGKQLTCVEASSFCGLKDKKYPD 369
           +DQ  GK L  V  +S CGL D  Y +
Sbjct: 24  LDQYKGKTLLVVNVASKCGLTDANYKE 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,328,369
Number of Sequences: 28952
Number of extensions: 333124
Number of successful extensions: 680
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)