Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00537
         (276 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0SBG6 Cluster: Transposase; n=2; Rhodococcus sp. RHA1|...    31   3.8  
UniRef50_Q6CB76 Cluster: Similarity; n=1; Yarrowia lipolytica|Re...    31   3.8  
UniRef50_Q00VD0 Cluster: Spliceosomal protein FBP11/Splicing fac...    31   6.6  

>UniRef50_Q0SBG6 Cluster: Transposase; n=2; Rhodococcus sp.
           RHA1|Rep: Transposase - Rhodococcus sp. (strain RHA1)
          Length = 556

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 208 LQRRQHYTSQLTTGSGP-GDRGAKGDAGRTDSKAST*SKMTLAQTTVLHSLT 56
           L+RR   TS +T G    G+ G  G   R DS++ T  + + ++TT  +++T
Sbjct: 369 LRRRCETTSHITCGVATVGETGTSGPESRGDSRSFTAERKSTSETTQQNAMT 420


>UniRef50_Q6CB76 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
           Similarity - Yarrowia lipolytica (Candida lipolytica)
          Length = 760

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 4   VFKGGNIGKEVLSTNNHVLMSVAQLSERGS 93
           V  GGN+GKE+L +N+  L   AQ++E  S
Sbjct: 672 VVGGGNLGKEILGSNSAALEDEAQVAEETS 701


>UniRef50_Q00VD0 Cluster: Spliceosomal protein FBP11/Splicing factor
           PRP40; n=1; Ostreococcus tauri|Rep: Spliceosomal protein
           FBP11/Splicing factor PRP40 - Ostreococcus tauri
          Length = 543

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 166 SGPGDRGAKGDAGRTDSKAST*SKMTLA 83
           SG G+RGAK + GRTD ++ T  + T A
Sbjct: 110 SGGGERGAKSEPGRTDEESLTIVRPTYA 137


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,378,927
Number of Sequences: 1657284
Number of extensions: 2711707
Number of successful extensions: 9048
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9030
length of database: 575,637,011
effective HSP length: 69
effective length of database: 461,284,415
effective search space used: 10148257130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)