Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00537
         (276 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   1.4  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   3.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   3.2  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    19   7.3  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 100  SKMTLAQTTVLHSLTRDYLYSALLCLY 20
            +K+T A  T+LH L +   YS  +  Y
Sbjct: 1154 TKITAASETILHGLKKYTNYSMEVLAY 1180


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 20.6 bits (41), Expect = 3.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 172 TGSGPGDRGAKGDAGRT 122
           TGS  GD GA+ +A  T
Sbjct: 45  TGSTNGDGGARSNADST 61


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 3.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 172 TGSGPGDRGAKGDAGRT 122
           TGS  GD GA+ +A  T
Sbjct: 201 TGSTNGDGGARSNADST 217


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 49  YLYSALLCLYY 17
           Y +  LLC+YY
Sbjct: 105 YAFIILLCVYY 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,106
Number of Sequences: 336
Number of extensions: 712
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4577651
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)