Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00537
         (276 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0996 + 10089800-10090149,10090426-10090483,10092922-100931...    27   2.1  
01_05_0407 - 21883009-21883950                                         27   2.8  
08_02_0332 + 15857514-15858113,15858226-15858268,15858474-15858538     26   3.7  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           26   3.7  
11_06_0012 + 19251085-19251666                                         25   6.5  
06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245     25   6.5  
05_03_0258 - 11153709-11156090                                         25   6.5  
04_04_1587 + 34630678-34632282                                         25   6.5  
01_06_1400 - 37036957-37037705,37037809-37037995,37038108-370382...    25   8.7  

>08_01_0996 +
           10089800-10090149,10090426-10090483,10092922-10093126,
           10093201-10093280,10093377-10093477,10093566-10093691,
           10094099-10094101,10094736-10094763,10094875-10094961,
           10095187-10095273,10095346-10095411,10095511-10095603,
           10095688-10095744,10095834-10095959,10096049-10096139,
           10096233-10096321,10096951-10097141,10097224-10097322,
           10098814-10098829
          Length = 650

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -3

Query: 205 QRRQHYTSQLTTGSGPGDRGAKGDAGRTDSKAST 104
           QRR       + GSG GDR A  DAG   + A T
Sbjct: 46  QRRPSSVGGASRGSGDGDRRAPRDAGGGGAAAVT 79


>01_05_0407 - 21883009-21883950
          Length = 313

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 205 QRRQHYTSQLTTGSGPGDRGAKGDAGRTDSKAST*SKMTLAQT 77
           +R +  +S     S PGD G+ G  G + +KA+  +    A T
Sbjct: 68  RRERGASSSTRRRSAPGDEGSSGGVGGSSAKAAATAAAAAAAT 110


>08_02_0332 + 15857514-15858113,15858226-15858268,15858474-15858538
          Length = 235

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 187 TSQLTTGSGPGDRGAKGDAGRTDSK 113
           T++ TTG   G  G  GD GR D +
Sbjct: 64  TAERTTGGEGGGGGGGGDGGREDGR 88


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 129 PASPFAPRSPGPLP 170
           PA+P APR PGP P
Sbjct: 355 PAAPAAPRPPGPGP 368


>11_06_0012 + 19251085-19251666
          Length = 193

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 202 RRQHYTSQLTTGSGPGDRGAKGDAGRTDSKAST 104
           RR+ +  +  +G G G RG++G  G   S   T
Sbjct: 82  RRRRHGGRRDSGGGAGGRGSRGGVGDLGSCGGT 114


>06_03_1374 - 29671511-29672252,29672452-29672558,29672904-29673245
          Length = 396

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 117 ESVLPASPFAPRSPGPLPVVNCE 185
           ESV PA   AP  P P P V+ E
Sbjct: 24  ESVAPAEETAPPLPAPPPPVSAE 46


>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 85  AQTTVLHSLTRDYLYSALLCLYYPL*RQ 2
           A TTVLH+L+R   Y   L L+  L RQ
Sbjct: 182 AYTTVLHALSRAGRYERALQLFAELRRQ 209


>04_04_1587 + 34630678-34632282
          Length = 534

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 117 LKPALKVR*PSLRQLCYTH*HVIICTQHFFAYITP 13
           L P ++   PSL  +  +H H++    HFF  I+P
Sbjct: 339 LPPGIRHGLPSLVSMDLSHNHLVGGIDHFFRSISP 373


>01_06_1400 -
           37036957-37037705,37037809-37037995,37038108-37038205,
           37039562-37039655
          Length = 375

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 94  MTLAQTTVLHSLTRDYLYSALLCLYY 17
           M LAQ    HSL    L S +LCL Y
Sbjct: 90  MILAQMPSFHSLRHVNLISLVLCLAY 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,402,720
Number of Sequences: 37544
Number of extensions: 74338
Number of successful extensions: 246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)