Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00537
         (276 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)             28   1.3  
SB_2132| Best HMM Match : ERM (HMM E-Value=1.6)                        27   3.1  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_38703| Best HMM Match : MMR_HSR1 (HMM E-Value=0.92)                 26   5.4  
SB_25978| Best HMM Match : PqqD (HMM E-Value=1.7)                      25   7.2  
SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)                   25   9.5  

>SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)
          Length = 733

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 254 KTINHLFSYIYKHFIATTSTTLYFTINNRQW 162
           K +N  FS +Y H + TTS T +  ++N  W
Sbjct: 143 KLVNDEFSVMYMHTLNTTSVTTWL-LSNTNW 172


>SB_2132| Best HMM Match : ERM (HMM E-Value=1.6)
          Length = 689

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 1   VVFKGGNIGKEVLSTNNHVLMSVAQLSERGSSYFKCW 111
           +V +G NIG  V   + HV      + E+ S  F C+
Sbjct: 253 IVEQGDNIGDNVAPNSEHVNEQDRAIKEKPSELFSCF 289


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -3

Query: 172  TGSGPGDRGAKGDAGRT 122
            TGS PGD G+KGD G T
Sbjct: 3619 TGS-PGDPGSKGDRGET 3634


>SB_38703| Best HMM Match : MMR_HSR1 (HMM E-Value=0.92)
          Length = 458

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 1   VVFKGGNIGKEVLSTNNHVLMSVAQLSERGSSYFKCW 111
           +V +G NIG  V   + HV      + E+ S  F C+
Sbjct: 211 IVEQGDNIGDNVAPNSEHVNEQDRAIKEKPSELFGCF 247


>SB_25978| Best HMM Match : PqqD (HMM E-Value=1.7)
          Length = 303

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 1   VVFKGGNIGKEVLSTNNHVLMSVAQLSERGSSYFKCW 111
           +V +G NIG  V   + HV      + E+ S  F C+
Sbjct: 246 IVEQGDNIGDNVAPNSEHVNEQDHAIKEKPSELFGCF 282


>SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)
          Length = 1013

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 1   VVFKGGNIGKEVLSTNNHVLMSVAQLSERGSSYFKCW 111
           +V +G NIG  V   + HV      + E+ S  F C+
Sbjct: 663 IVEQGDNIGDNVAPNSEHVNEQDRAIKEKLSELFGCF 699


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,410,438
Number of Sequences: 59808
Number of extensions: 83432
Number of successful extensions: 232
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 16,821,457
effective HSP length: 68
effective length of database: 12,754,513
effective search space used: 293353799
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)