Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00537
         (276 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41553-3|AAA83293.1|  289|Caenorhabditis elegans Collagen protei...    26   3.3  
M25481-1|AAA27987.1|  283|Caenorhabditis elegans collagen protein.     26   3.3  
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen...    26   4.4  
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ...    26   4.4  
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    25   5.8  
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    25   5.8  
Z81104-3|CAD89749.1|  660|Caenorhabditis elegans Hypothetical pr...    25   7.7  

>U41553-3|AAA83293.1|  289|Caenorhabditis elegans Collagen protein
           19 protein.
          Length = 289

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 163 GPGDRGAKGDAGR 125
           GPG++G +GDAGR
Sbjct: 178 GPGEQGPQGDAGR 190


>M25481-1|AAA27987.1|  283|Caenorhabditis elegans collagen protein.
          Length = 283

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 163 GPGDRGAKGDAGR 125
           GPG++G +GDAGR
Sbjct: 172 GPGEQGPQGDAGR 184


>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
           protein.
          Length = 1759

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 PGDRGAKGDAGRTDSKAST*SKMTL 86
           PGD GA G AG     AST SK T+
Sbjct: 228 PGDIGAMGPAGPPGPIASTMSKGTI 252


>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
           isoform b protein.
          Length = 1759

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 PGDRGAKGDAGRTDSKAST*SKMTL 86
           PGD GA G AG     AST SK T+
Sbjct: 228 PGDIGAMGPAGPPGPIASTMSKGTI 252


>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
           protein F54D11.2 protein.
          Length = 1145

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 132 ASPFAPRSPGPLPVVN 179
           A+P AP +P P+PV+N
Sbjct: 303 AAPRAPPAPKPIPVIN 318


>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
            protein R193.2 protein.
          Length = 1853

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 129  PASPFAPRSPGPLPVV 176
            PASP +P  PGP+PVV
Sbjct: 1074 PASP-SPTLPGPIPVV 1088


>Z81104-3|CAD89749.1|  660|Caenorhabditis elegans Hypothetical
           protein M199.5 protein.
          Length = 660

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 160 PGDRGAKGDAGRTDSKAST*SK 95
           PG +G+KGD G+   K S+  K
Sbjct: 132 PGAKGSKGDDGKKGDKGSSGEK 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,821,512
Number of Sequences: 27780
Number of extensions: 65331
Number of successful extensions: 275
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)