Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00537
         (276 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62640.1 68418.m07862 proline-rich family protein contains pr...    25   5.4  
At4g00020.1 68417.m00002 BRCA2 repeat-containing protein low sim...    25   5.4  
At5g63830.1 68418.m08012 zinc finger (HIT type) family protein c...    25   7.1  
At5g11310.1 68418.m01320 pentatricopeptide (PPR) repeat-containi...    25   9.4  
At2g17550.1 68415.m02031 expressed protein                             25   9.4  

>At5g62640.1 68418.m07862 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 520

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 126 LPASPFAPRSPGPLP 170
           LP SPF P  PGP P
Sbjct: 213 LPHSPFPPPPPGPPP 227


>At4g00020.1 68417.m00002 BRCA2 repeat-containing protein low
           similarity to SP|P51587 Breast cancer type 2
           susceptibility protein {Homo sapiens}; contains Pfam
           profile PF00634: BRCA2 repeat
          Length = 765

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 31  EVLSTNNHVLMSVAQLSERGSSYFKCWL 114
           +V+  N + +MS+ Q       +FKCWL
Sbjct: 528 QVMQINMYSVMSLLQTRLELKLFFKCWL 555


>At5g63830.1 68418.m08012 zinc finger (HIT type) family protein
           contains Pfam profile: PF04438 HIT zinc finger
          Length = 343

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 28  KEVLSTNNHVLMSVAQLSERGSSYFKCWL 114
           KEV S++   L    +L+ER   Y  CW+
Sbjct: 263 KEVKSSSGRDLKKKLKLAERKVFYMMCWV 291


>At5g11310.1 68418.m01320 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 602

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -2

Query: 251 TINHLFSYIYKHFIATTSTTLYFTI 177
           T NH F Y  KH        LYF +
Sbjct: 392 TYNHFFKYFSKHNKTEEGMNLYFKL 416


>At2g17550.1 68415.m02031 expressed protein
          Length = 765

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 208 LQRRQHYTSQLTTGSGPGDRGAKGDA 131
           LQR   Y   LTT SG    G++G +
Sbjct: 234 LQRAYDYEDSLTTSSGTTMEGSRGSS 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,380,877
Number of Sequences: 28952
Number of extensions: 57723
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 221603184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)