Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00536
(510 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical pr... 101 4e-22
AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal pro... 101 4e-22
Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical pr... 27 7.9
AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic in... 27 7.9
>Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical
protein T05F1.3 protein.
Length = 146
Score = 101 bits (241), Expect = 4e-22
Identities = 49/97 (50%), Positives = 64/97 (65%), Gaps = 3/97 (3%)
Frame = +2
Query: 11 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 190
R+ ++KDV+Q + K++A LKK+GKVKVPE DLVK KELAP DPDWFY R A++
Sbjct: 3 RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62
Query: 191 RHIYIRSPVGVKTVTKIFGG---RNVMELHLHISAGH 292
RH+Y R P G+ K++GG R V H SAG+
Sbjct: 63 RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGN 98
Score = 64.5 bits (150), Expect = 4e-11
Identities = 32/53 (60%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Frame = +1
Query: 253 QRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLDRI 408
+R GV P+HF S+G+ RKA+Q LE +K VEK DG GRIL+ QGR+DLDRI
Sbjct: 83 KRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRI 135
>AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal
protein S19 protein.
Length = 146
Score = 101 bits (241), Expect = 4e-22
Identities = 49/97 (50%), Positives = 64/97 (65%), Gaps = 3/97 (3%)
Frame = +2
Query: 11 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 190
R+ ++KDV+Q + K++A LKK+GKVKVPE DLVK KELAP DPDWFY R A++
Sbjct: 3 RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62
Query: 191 RHIYIRSPVGVKTVTKIFGG---RNVMELHLHISAGH 292
RH+Y R P G+ K++GG R V H SAG+
Sbjct: 63 RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGN 98
Score = 64.5 bits (150), Expect = 4e-11
Identities = 32/53 (60%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Frame = +1
Query: 253 QRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-GRILTTQGRRDLDRI 408
+R GV P+HF S+G+ RKA+Q LE +K VEK DG GRIL+ QGR+DLDRI
Sbjct: 83 KRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRI 135
>Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -3
Query: 256 VAPTKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 131
++ D+GD S + V +DGS H++ I++I +++
Sbjct: 490 ISRRSDMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 531
>Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -3
Query: 256 VAPTKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 131
++ D+GD S + V +DGS H++ I++I +++
Sbjct: 719 ISRRSDMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 760
>Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -3
Query: 256 VAPTKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 131
++ D+GD S + V +DGS H++ I++I +++
Sbjct: 490 ISRRSDMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 531
>Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -3
Query: 256 VAPTKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 131
++ D+GD S + V +DGS H++ I++I +++
Sbjct: 719 ISRRSDMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 760
>AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic
initiation factor protein3.E protein.
Length = 432
Score = 27.1 bits (57), Expect = 7.9
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Frame = +2
Query: 110 DLVKTARFKELAPYDPDWFYVRCAAILRH----IYIRSPVGVKTVTKIFGGRNVMELHLH 277
DL+K + + P+D +W V A L H +Y P G + ++F + +
Sbjct: 188 DLLKLRAYIDANPFDTEWELVTQRAWLMHWALFVYYNYPKGRDEIIEMFLNQQPYLNAIQ 247
Query: 278 ISAGH--QAVLHARLCNRWRH*SLLRKFRTVVAFSPHKVDETLTESL 412
+ A H + + A + ++ R + L+ V+ H + +T+ L
Sbjct: 248 VLAPHLLRYLAVAVVTSKSRQKNSLKDLVKVIDIERHSYKDPVTDFL 294
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,666,412
Number of Sequences: 27780
Number of extensions: 214071
Number of successful extensions: 548
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -