Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00535
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   2.5  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   3.4  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   4.4  
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    25   4.4  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    24   5.9  

>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 95  APKRFCVCETKFNDKNIPFH 36
           +PK+F   E  FND N  +H
Sbjct: 398 SPKKFAFSEVPFNDSNSIYH 417


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
 Frame = +3

Query: 36  MKWDIFVVKLGFTYTESLGCSNFSFLVSPTI*IKICNLYFDSVSPKAGISRLIREKKTKT 215
           ++W  F + +GF Y E +  S+ S+  +  I      +    +    G      ++K   
Sbjct: 261 IEWQNFRMHIGFNYREGIVLSDISYNDNGHIRPLFYRMSIAEMVVPYGNPEHPHQRKHAF 320

Query: 216 T--EYSLKIFT----LNYD--GI*HVIDVHFVNNS 296
              EY     T    L  D  G+ H +D HFVNN+
Sbjct: 321 DLGEYGAGYLTNPLALGCDCKGVIHYLDAHFVNNT 355


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = +3

Query: 105 SFLVSPTI*IKICNLYFDSVSPKAGISRLIREKKTKTTEYSLKIFTLNY 251
           S ++SP++     ++  +S S K+G  +++     +TT +  ++ TL Y
Sbjct: 369 SSVISPSVSSPTSSILTNSGSIKSGDHQIVTTSFVQTTTHGSQVETLTY 417


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 12  YKKTIPNLMKWDIFVVKLGFTYTESLGCSNF 104
           Y+K IP    W      LG     S+G SNF
Sbjct: 115 YEKKIPISEGWKAMETALGTGLVHSVGVSNF 145


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 127 IVGLTKKEKLLHPRDSVY 74
           ++G  ++  LLHP DS Y
Sbjct: 484 LLGTNRESSLLHPNDSFY 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,373,786
Number of Sequences: 5004
Number of extensions: 25501
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)