Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00535
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82278-10|CAC15860.2|  390|Caenorhabditis elegans Hypothetical p...    28   2.1  
AL132943-14|CAC14395.2|  390|Caenorhabditis elegans Hypothetical...    28   2.1  
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    26   6.4  
U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>Z82278-10|CAC15860.2|  390|Caenorhabditis elegans Hypothetical
           protein Y116F11B.2 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 242 CKNL*AVLCSFCLFFAY*P 186
           CKNL A+ C+FCL   Y P
Sbjct: 282 CKNLPALTCTFCLPMVYNP 300


>AL132943-14|CAC14395.2|  390|Caenorhabditis elegans Hypothetical
           protein Y116F11B.2 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 242 CKNL*AVLCSFCLFFAY*P 186
           CKNL A+ C+FCL   Y P
Sbjct: 282 CKNLPALTCTFCLPMVYNP 300


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 54  VVKLGFTYTESLGCSNFSFLVSPTI*IKICNLYFDSVSPKAGISRL 191
           V KLG  +++ +G S + F +   + + +  LYF S    AG + L
Sbjct: 72  VQKLGAKWSQIIGASGYLFFMLTFLYLNVWLLYFGSAVLGAGAALL 117


>U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical
           protein T13C5.2 protein.
          Length = 434

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 24  IPNLMKWDIFVVKLGFTYTESLGCSNFSFL 113
           IPNL++W    V+ G  YT  L  + F F+
Sbjct: 219 IPNLLQWCPTAVEAGIEYTLGLITAIFPFI 248


>Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical
           protein ZK455.2 protein.
          Length = 1118

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +3

Query: 186 RLIREKKTKTTEYSLKIFTLN----YDGI*HVIDVHFVNNSPLHLG 311
           R +  KKT  + +S  +FT+     Y G+ H   +H++ N+ ++ G
Sbjct: 92  RSLNLKKTSLSNFS--VFTMESCNKYSGVEHAAFLHYLKNASVYFG 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,336,089
Number of Sequences: 27780
Number of extensions: 134479
Number of successful extensions: 257
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)