Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00535
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   5.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   7.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   9.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   9.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    20   9.6  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 221 VQLKDFYIKL*WNI 262
           + L DFY+ + W+I
Sbjct: 204 IDLSDFYLSVEWDI 217


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 9   VYKKTIPNLMKW 44
           V K T PNL KW
Sbjct: 831 VGKATSPNLTKW 842


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 216 TEYSLKIFT 242
           TEY+LKI+T
Sbjct: 249 TEYTLKIYT 257


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 221 VQLKDFYIKL*WNI 262
           + L D+YI + W+I
Sbjct: 191 IDLTDYYISVEWDI 204


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 216 TEYSLKIFT 242
           TEY+LKI+T
Sbjct: 249 TEYTLKIYT 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,550
Number of Sequences: 438
Number of extensions: 1984
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)