Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00532
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   3.3  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    26   4.4  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    26   5.8  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    25   7.7  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    25   7.7  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 328 SSSGTLSYTDWAIIERLIVCLLILFLVHLSFVYS 227
           SSS T+ ++ W     L++ L +LF V LSFV S
Sbjct: 426 SSSSTVPFSSWL----LLIFLYLLFTVPLSFVGS 455


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 145 IVASLFGLLLLSIIYCIVVKRTNFMRRKNK 234
           I+ SL+ L    +IY + +   +F+R+KNK
Sbjct: 215 IINSLYLLTAKPVIYLVNMSERDFLRQKNK 244


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 381 VTTFHNAGHFLEGRWKVVL 325
           + T+ N GH   G+WK  L
Sbjct: 192 INTWPNVGHLFAGKWKTTL 210


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/24 (62%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +1

Query: 139 IIIVASLFGLLLLSIIYC--IVVK 204
           I I   LF LLLL +IYC  IVVK
Sbjct: 124 IAIYICLFVLLLLGLIYCSKIVVK 147


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/24 (62%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +1

Query: 139 IIIVASLFGLLLLSIIYC--IVVK 204
           I I   LF LLLL +IYC  IVVK
Sbjct: 124 IAIYICLFVLLLLGLIYCSKIVVK 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,322
Number of Sequences: 5004
Number of extensions: 49366
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)