Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00532
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0387 + 2922208-2922704,2922956-2923088,2923487-2923549,292...    30   2.0  
02_02_0042 - 6297211-6297981                                           29   3.4  
02_05_0033 + 25250312-25250563,25251469-25251540,25251925-252520...    28   6.0  

>11_01_0387 +
           2922208-2922704,2922956-2923088,2923487-2923549,
           2923564-2923680,2925040-2925399
          Length = 389

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = -3

Query: 328 SSSGTLSYTDWAIIERLIVCLLILFLVHLSFVYS 227
           SSSG L+Y D  II+ + +C L++F+++  + YS
Sbjct: 226 SSSGVLAYWDAMIIKSVSLC-LVVFILNCEYRYS 258


>02_02_0042 - 6297211-6297981
          Length = 256

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 149 WHPCSVYCFSASY 187
           W PC+VYC++ SY
Sbjct: 181 WQPCAVYCYNMSY 193


>02_05_0033 +
           25250312-25250563,25251469-25251540,25251925-25252069,
           25253449-25253558,25253665-25254079,25254166-25254413
          Length = 413

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +1

Query: 178 SIIYCIVVKRTNFMRRKNKQKTNELRKVSGGKL*DAQ*WPSLY-TTEFPKKNNLPATFKK 354
           S+IY  VVK T  + RK+++   +LR     K+ + +   + Y T +  +K +L    K 
Sbjct: 144 SVIYSTVVKFTRMLERKDQKTLEKLRAERKAKIDELKERTNYYLTQQLIQKYDLDPAAKA 203

Query: 355 MPSVVKRSYLRIKQAIKL 408
             + V  S L  +  +K+
Sbjct: 204 AAASVLASKLGEETGLKV 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,057,582
Number of Sequences: 37544
Number of extensions: 291249
Number of successful extensions: 614
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)