Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00532
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56345| Best HMM Match : Integrin_alpha (HMM E-Value=0.00047)        31   1.1  
SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_35077| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)                  28   8.1  
SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  
SB_43036| Best HMM Match : Chorion_3 (HMM E-Value=1.6)                 28   8.1  

>SB_56345| Best HMM Match : Integrin_alpha (HMM E-Value=0.00047)
          Length = 594

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 136 WIIIVASLFGLLLLSIIYCIVVKRTNFMRRKNKQKTNE 249
           WIIIV+ L GL+LL ++   + K   F R++ ++  N+
Sbjct: 541 WIIIVSVLAGLILLGLLVFGLYKAGFFKRKRPEEMAND 578


>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 367  QRWAFS*RSLEGCSSSGTLSYT--DWAIIERLIVCL 266
            Q+W F+ RS +G  S+GT  YT  D + +  + VCL
Sbjct: 1035 QQWDFAGRSEDGAESNGTTLYTWDDKSSVPLVHVCL 1070


>SB_35077| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 367 QRWAFS*RSLEGCSSSGTLSYT--DWAIIERLIVCL 266
           Q+W F+ RS +G  S+GT  YT  D + +  + VCL
Sbjct: 38  QQWDFAGRSEDGAESNGTTLYTWDDKSSVPLVHVCL 73


>SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)
          Length = 710

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -1

Query: 645 LVPAVSNLTLI*F*EKYGFILVITCETCVYV*IFLINLNDFTNSTANYAKRYIFT 481
           +VP VS    + F   +GFILV+    C  +  + +  + +     + +K Y+F+
Sbjct: 160 IVPVVSIFLSVVFLACFGFILVVVIIFCYIMCCYTLRQHRYRLKAIHKSKAYVFS 214


>SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1784

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 145  IVASLFGLLLLSIIYCIVVKRTNFMRRKN-KQKT 243
            I+A    +++++I   I VK TN+  RKN K+KT
Sbjct: 1393 IIAIPVNIIIVTIFRSIKVKSTNYQTRKNYKEKT 1426


>SB_43036| Best HMM Match : Chorion_3 (HMM E-Value=1.6)
          Length = 621

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 683 DAGPRAASDATTGWFPRYLILP 618
           D G R +SD   G + RYL+LP
Sbjct: 60  DTGERVSSDGREGGYSRYLMLP 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,694,025
Number of Sequences: 59808
Number of extensions: 343559
Number of successful extensions: 1064
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)