Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00532
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi...    28   6.6  
At3g16030.1 68416.m02027 lectin protein kinase family protein co...    27   8.8  
At3g09550.1 68416.m01134 ankyrin repeat family protein contains ...    27   8.8  

>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
           protein similar to Hsc70-interacting protein (Hip) from
           {Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
           contains Pfam profile PF00515: tetratricopeptide repeat
           (TPR) domain
          Length = 441

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 267 RQTIRRSMMAQSVYDRVPEEEQPSS 341
           R  +RR   AQ+ YD+  +EEQ SS
Sbjct: 261 RDRLRRRAEAQAAYDKAKKEEQSSS 285


>At3g16030.1 68416.m02027 lectin protein kinase family protein
           contains Pfam domains PF00069: Protein kinase domain and
           PF01453: Lectin (probable mannose binding)
          Length = 850

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
 Frame = +1

Query: 130 ALWIIIVASLFGLLLLS--IIYCIV----VKRTNFMRRKNKQKTNELRKVSGGKL 276
           A W+++VASLF ++ ++  IIY ++    +K TNF+    K  +++   ++  +L
Sbjct: 421 ATWLVVVASLFLIIPVTWLIIYLVLRKFKIKGTNFVSESLKMISSQSCSLTNKRL 475


>At3g09550.1 68416.m01134 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 436

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 139 IIIVASLFGLLLLSIIYCIVVKRTNFMRRKNKQKT 243
           +I   ++ G+L +   Y +  KRT  +R+K K+K+
Sbjct: 376 VIGTVTMTGILSIMTYYVVKSKRTRIVRKKEKKKS 410


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,188,633
Number of Sequences: 28952
Number of extensions: 240735
Number of successful extensions: 551
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)