Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00531
         (636 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      26   0.30 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      26   0.30 
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   2.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.8  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   4.9  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   8.6  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 462 PHNHD*ILFTNKQANQHPCTRRGKKG*RAQHSNQL 566
           P N D  L  N+  ++ P +++ KKG +  H N L
Sbjct: 427 PTNFD-ALIVNEMRSEKPESKKDKKGSQVDHKNNL 460


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 462 PHNHD*ILFTNKQANQHPCTRRGKKG*RAQHSNQL 566
           P N D  L  N+  ++ P +++ KKG +  H N L
Sbjct: 319 PTNFD-ALIVNEMRSEKPESKKDKKGSQVDHKNNL 352


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 463 LTITTKSYSQTNKQTNTPALVEVRRANVLNTL 558
           +   TK  S  N+++N P + + RRA + N+L
Sbjct: 24  MAAATKRVSD-NRRSNKPIMEKRRRARINNSL 54


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 156 IFIVIPHTLINKLWFHFGSDS 94
           IFI+IP TL +  +F  G +S
Sbjct: 501 IFIIIPVTLTSVCYFMIGLNS 521


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 57  VFCRTRGTCFQWIYAFS 7
           VFCR R   + + YAFS
Sbjct: 112 VFCRDRVNPYLFYYAFS 128


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 223 GSATGDVNISGV 258
           GS  GDVNIS +
Sbjct: 33  GSVLGDVNISAI 44


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,578
Number of Sequences: 336
Number of extensions: 3521
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)