Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00531
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    29   0.56 
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   2.3  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   3.0  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   6.9  
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...    25   6.9  
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   9.1  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.1  

>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 417 SSIVTFEDIIVKLGKPHNHD*ILFTNKQANQ 509
           S  +  +DI+VKL  P N+D  +F++K  N+
Sbjct: 530 SHTLELQDILVKLSTPKNNDVFIFSSKITNK 560


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 383 EVRQMEERILQIFDSYVRRHHCKTRETSQSRLN 481
           +V Q+E RILQ+F   V+   CK+ +   S LN
Sbjct: 311 DVNQLETRILQLFSKVVQL--CKSEDIEGSILN 341


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 175 FRHCSCHLHRHPTYSH*QTLVPFWERQHCSHLRLVSSQIRLLQNQRDLLPVD 20
           FRH    LH HP + H  +++P        H++LV  +++ L +   LL  D
Sbjct: 73  FRHGYWKLHPHPHHQH-DSIIPASWIHDTPHMKLVFHRLQNLPDGDLLLEND 123


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 35  VPLVLQKTNL*RYQTKMRTMLSLPKWNQSLLMRVCG 142
           VPL+ QKT +     K+ ++  LPK N+  +  +CG
Sbjct: 391 VPLI-QKTKIAVVVRKIFSLAGLPKENEDEVKSICG 425


>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 356 VQMKPVILIHNYRSATARGSE 294
           +QMK  I  H  R+AT RGS+
Sbjct: 59  IQMKKTIKQHEERNATQRGSD 79


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 145 HPTYSH*QTLVPFWERQH 92
           HP Y + ++  PFWE  H
Sbjct: 197 HPAYENDRSWRPFWENYH 214


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 405 GFCRSSIVTFEDIIVKLGKPHN 470
           GFC  SIVT    + KL K H+
Sbjct: 115 GFCSESIVTSVKSVYKLRKAHS 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,378
Number of Sequences: 5004
Number of extensions: 58696
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)