Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00531
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0520 - 16748646-16748741,16748821-16748895,16749260-167493...    29   3.1  
03_05_1157 + 30816143-30816359,30817005-30817120                       28   5.4  
01_07_0187 + 41862342-41862622,41862730-41862912,41863236-418632...    28   7.1  
08_01_0207 - 1647168-1647251,1647583-1647726,1648176-1648287,164...    27   9.4  
06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322     27   9.4  

>04_03_0520 -
           16748646-16748741,16748821-16748895,16749260-16749362,
           16749635-16749783,16750986-16751110,16751320-16751389
          Length = 205

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 74  QTKMRTMLSLPKWNQSLLMRVCGMTMKMARTMT 172
           Q K+   + LP  + SL +   G TMK+ART T
Sbjct: 170 QQKVHVQIDLPSQSSSLSITKKGQTMKVARTNT 202


>03_05_1157 + 30816143-30816359,30817005-30817120
          Length = 110

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -1

Query: 150 IVIPHTLINKLWFHFGSDSIVLIFVW 73
           ++IPH  +NK  FH  S +++LIF+W
Sbjct: 85  LIIPHDTLNKGKFHKRS-NLLLIFLW 109


>01_07_0187 +
           41862342-41862622,41862730-41862912,41863236-41863299,
           41863547-41863756,41863850-41864035,41864180-41864478,
           41864584-41864731,41864798-41864863,41864945-41865217,
           41865523-41865741,41865864-41866013
          Length = 692

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 162 RAIFIVIPHTLINKLWFHFGSDSIVLIFVWY 70
           R   + +P TL+++LW HF     +  +V Y
Sbjct: 142 RLAILQLPFTLLSRLWVHFACLCFISFYVVY 172


>08_01_0207 -
           1647168-1647251,1647583-1647726,1648176-1648287,
           1648392-1648573,1648649-1648780,1648900-1649856,
           1649949-1650734
          Length = 798

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 307 HEVPKNGSCASPTAPPSP 254
           H  P NGS A+P  PP P
Sbjct: 497 HSGPSNGSAANPPKPPPP 514


>06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322
          Length = 665

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 234 SCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFH 109
           SC+ + TS + I +  +V+ +V++  +FI +     NK   H
Sbjct: 471 SCQDVSTSIYVITLAGAVLIYVVIHIVFITLEDEDKNKTSVH 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,514,256
Number of Sequences: 37544
Number of extensions: 414089
Number of successful extensions: 1192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)