Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00531
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-2|AAP46272.1|  169|Caenorhabditis elegans Pharyngeal enha...    31   0.52 
U50199-1|AAA91262.1|  427|Caenorhabditis elegans Pharyngeal enha...    31   0.52 
AF160187-1|AAD42897.1|  425|Caenorhabditis elegans pharyngeal en...    31   0.52 
Z81088-3|CAB03128.1|  283|Caenorhabditis elegans Hypothetical pr...    31   0.91 
Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical pr...    30   1.6  

>U50199-2|AAP46272.1|  169|Caenorhabditis elegans Pharyngeal
           enhancer binding protein1, isoform b protein.
          Length = 169

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = +3

Query: 288 PFFGTSCRGRPVIVYQNYRFHLHQKYGEKT--SWRCA---KWRNG-FCRSSIVTFEDIIV 449
           P   TS +G   ++YQ YR++++Q   E+   SWRC    K  +G +C+    T  D   
Sbjct: 51  PQIVTSFKGYQKLMYQGYRYNIYQIAPERNFKSWRCVCAKKMHDGQWCKCRAETTMDNKN 110

Query: 450 KLGK-PHNH 473
              K  HNH
Sbjct: 111 ACTKGSHNH 119


>U50199-1|AAA91262.1|  427|Caenorhabditis elegans Pharyngeal
           enhancer binding protein1, isoform a protein.
          Length = 427

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = +3

Query: 288 PFFGTSCRGRPVIVYQNYRFHLHQKYGEKT--SWRCA---KWRNG-FCRSSIVTFEDIIV 449
           P   TS +G   ++YQ YR++++Q   E+   SWRC    K  +G +C+    T  D   
Sbjct: 51  PQIVTSFKGYQKLMYQGYRYNIYQIAPERNFKSWRCVCAKKMHDGQWCKCRAETTMDNKN 110

Query: 450 KLGK-PHNH 473
              K  HNH
Sbjct: 111 ACTKGSHNH 119


>AF160187-1|AAD42897.1|  425|Caenorhabditis elegans pharyngeal
           enhancer binding protein-1 protein.
          Length = 425

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = +3

Query: 288 PFFGTSCRGRPVIVYQNYRFHLHQKYGEKT--SWRCA---KWRNG-FCRSSIVTFEDIIV 449
           P   TS +G   ++YQ YR++++Q   E+   SWRC    K  +G +C+    T  D   
Sbjct: 49  PQIVTSFKGYQKLMYQGYRYNIYQIAPERNFKSWRCVCAKKMHDGQWCKCRAETTMDNKN 108

Query: 450 KLGK-PHNH 473
              K  HNH
Sbjct: 109 ACTKGSHNH 117


>Z81088-3|CAB03128.1|  283|Caenorhabditis elegans Hypothetical
           protein F53F1.3 protein.
          Length = 283

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 302 LVPWPTGNCVSELPVSFAPEIRRENLMEVRQMEERILQIFDSYVRRHHCKT 454
           L+ W T   V  +P S  PE   +NL  V   EE + +I +  + +H+ +T
Sbjct: 227 LLSWATSQKVGIIPKSTNPERLAQNLKTVLLEEEEVKKICNLNLDKHYVRT 277


>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -1

Query: 219 KTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRHKFVFCRTR 40
           KT  +HI++ +  +   +++A+F+V+P T I  L  +F S  I      Y +  +    +
Sbjct: 627 KTVKYHIQVTVLFLCSCVIQALFVVLPVTHI-VLCVYFDSFKIYTKDYIY-YSLLTQAHQ 684

Query: 39  GTCFQWIYAFS 7
           GT F   Y  S
Sbjct: 685 GTAFTLFYVLS 695


>U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical
           protein F01G12.1 protein.
          Length = 178

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 138 HTLINKLWFHFGSDSIVLIFVW-YRHKFVFCRTRGTCF-QWIYA 13
           HT+  K+WFH+G D +VL   W    K       G  F  WI+A
Sbjct: 116 HTM--KMWFHWGFDEVVLFDFWRIDDKNALAVILGAGFGHWIFA 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,708,539
Number of Sequences: 27780
Number of extensions: 344344
Number of successful extensions: 1018
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)