Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00531
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase famil...    33   0.21 
At5g09840.1 68418.m01138 expressed protein contains Pfam profile...    32   0.37 
At5g58950.1 68418.m07384 protein kinase family protein concontai...    29   2.6  
At5g24540.1 68418.m02898 glycosyl hydrolase family 1 protein con...    25   5.2  
At1g49670.1 68414.m05570 ARP protein (REF) identical to ARP prot...    28   6.0  
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea...    28   6.0  
At4g22060.1 68417.m03190 F-box family protein contains F-box dom...    27   7.9  
At3g18470.1 68416.m02347 expressed protein similar to PGPS/D12 [...    27   7.9  
At2g35660.2 68415.m04374 monooxygenase family protein nearly ide...    27   7.9  
At2g35660.1 68415.m04373 monooxygenase family protein nearly ide...    27   7.9  

>At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase family
           protein similar to sphingosine-1-phosphate lyase [Homo
           sapiens] GI:10129683; contains Pfam profile PF00282:
           Pyridoxal-dependent decarboxylase conserved domain
          Length = 544

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 4   KRKCVDPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMW 141
           K+K VD L++G S   K++   +P +     V  KME E  N+++W
Sbjct: 84  KQKVVDQLQSGSSSKKKNKTEVLPVKGLGVEVLEKMENEKRNDAIW 129


>At5g09840.1 68418.m01138 expressed protein contains Pfam profile
            PF04396: Protein of unknown function, DUF537
          Length = 924

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 356  PEIRRENLMEVRQMEERILQIFDSYVRRHHCKTRETSQSRLNLIHKQTSKPTPLHS 523
            PE +++ +M     E  +LQI DSY      + +E    R  + + +  KPT  +S
Sbjct: 862  PEKKKQQMMSKEGKESSLLQILDSYYTNKDGELKENPVERKLVSNGRKQKPTKTYS 917


>At5g58950.1 68418.m07384 protein kinase family protein concontains
           protein kinase domain, Pfam:PF00069
          Length = 525

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 58  EFVTIPDEDENNAVAPKMEPEFVNE 132
           + +T+PD+D+N  +  ++E +F  E
Sbjct: 234 KLITVPDDDDNGCLGARLEKQFTKE 258


>At5g24540.1 68418.m02898 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to amygdalin hydrolase isoform AH I precursor
           (GI:16757966) [Prunus serotina]
          Length = 534

 Score = 24.6 bits (51), Expect(2) = 5.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 366 GEKTSWRCAKWRNGFC 413
           G K   RC+KW N  C
Sbjct: 212 GNKAMGRCSKWVNSLC 227



 Score = 21.8 bits (44), Expect(2) = 5.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 270 VGDAQDPFFGTSCRGRPVIVYQNYRFHLHQKYGEKTS 380
           +  A D  +G+    R +  ++NY     Q++G+K S
Sbjct: 157 IPQALDDEYGSFLSPRIIDDFRNYARFCFQEFGDKVS 193


>At1g49670.1 68414.m05570 ARP protein (REF) identical to ARP protein
           GB:CAA89858 GI:886434 from [Arabidopsis thaliana];
           contains Pfam profile PF00107: oxidoreductase,
           zinc-binding dehydrogenase family
          Length = 629

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 568 HFRTFRVLNVSVNGYGISIPLR 633
           H  TF  L++ +N  GIS PLR
Sbjct: 86  HLATFGTLDICINNAGISTPLR 107


>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
           family protein similar to signal transducer and
           activator of transcription interacting protein 1
           (GI:15929722) {Mus musculus}; similar to hypothetical
           protein GB:AAD43147 GI:5430747 from (Arabidopsis
           thaliana); contains Pfam PF00400: WD domain, G-beta
           repeat (11 copies, 2 weak)
          Length = 840

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +1

Query: 19  DPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMW 141
           +PLE    G   D F T+P+        P +E +    ++W
Sbjct: 550 EPLERNGGGEGLDTFETVPEAAPAELKEPPIEDQLAFHTLW 590


>At4g22060.1 68417.m03190 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 399

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 90  VLIFVWYRHKFV-FCRTRGTCFQWIYA 13
           +LI V+ R  FV F RT+  C  W+YA
Sbjct: 20  LLIMVFERLGFVDFQRTKSVCLAWLYA 46


>At3g18470.1 68416.m02347 expressed protein similar to PGPS/D12
           [Petunia x hybrida] GI:4105794; contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 133

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 110 ILGATALFSSSSGIVTNSSFAEPEGPASSGSTHF 9
           ++G   LFS +      S F  PE P S   THF
Sbjct: 57  VVGLPCLFSCTYRTKIRSKFGLPESPTSDCVTHF 90


>At2g35660.2 68415.m04374 monooxygenase family protein nearly
           identical to CTF2A [GI:4164576][Plant Physiol. 119, 364
           (1999), PGR99-008]
          Length = 325

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 384 SMRFSLRISGANETGNSDTQLPVGHGTR 301
           ++RFS ++       N DT L +G GTR
Sbjct: 45  TIRFSSKLESIQSNANGDTLLQLGDGTR 72


>At2g35660.1 68415.m04373 monooxygenase family protein nearly
           identical to CTF2A [GI:4164576][Plant Physiol. 119, 364
           (1999), PGR99-008]
          Length = 439

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 384 SMRFSLRISGANETGNSDTQLPVGHGTR 301
           ++RFS ++       N DT L +G GTR
Sbjct: 159 TIRFSSKLESIQSNANGDTLLQLGDGTR 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,829,535
Number of Sequences: 28952
Number of extensions: 322985
Number of successful extensions: 938
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)