Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00530X
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce...    26   2.5  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   2.5  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    25   4.4  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    24   7.7  
SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit ...    24   7.7  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    24   7.7  

>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 34  EVRFSSVVDRFYDSRE 81
           EV F SVVDR+YD  E
Sbjct: 57  EVLFESVVDRYYDGFE 72


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 307 VPTPYKFELTFTLSRTLKTFTKLTVYCMFTLKLFLSG 197
           VP+    EL+  ++ +L   +K  +YC    ++ LSG
Sbjct: 441 VPSELPMELSMAVNASLGALSKYYIYCTEPFRIPLSG 477


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 205 LSGLYVHRGTENNSKSLDQDVLDAPTTRRNHV-IFFYRRKLSVLESRRS 62
           L G+Y+H+G  +  K ++  +L      R  + + + RR+LS L  R S
Sbjct: 181 LGGVYLHQGFNDTKKFINDHILSKQLDPRTMLQLQWPRRQLSRLCKRLS 229


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 2   FFFFFLNVYKTRLGFQVLLTASTTLENAQLATVKE 106
           FFFFF++ +  +   Q LLT    L NA L  + +
Sbjct: 17  FFFFFVSRFNDKYELQPLLTLG--LLNASLTALSD 49


>SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit
           Arc34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = -2

Query: 361 NSNYSNLDVVGTA--ALAANVPTPYKFELTFTLSRTLKTFTKLTVYCMFTLKLFLSGLYV 188
           + N S++D V T    +  ++ TP + +    +S ++K + +L  Y    L   + G YV
Sbjct: 21  SENPSSIDQVVTDFDGVTFHISTPEE-KTKILISLSMKCYPELVNYGTLDLLKQIYGAYV 79

Query: 187 HRGTENNSKSLDQDVLDAPTT 125
           H      + S+  D+   P T
Sbjct: 80  HEPEMGYNFSILIDLQQLPAT 100


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = -2

Query: 298 PYKFELTFTLSRTLKTFTKLTVYCMFTLKLFLSGLYVHRGTENNSKSLDQDVLDAPTTRR 119
           P+   L+    R  +T+T L  Y + +      G Y HR TE++  S    VL A     
Sbjct: 217 PFNEILSLKQIRHNQTYTNLINYLLGS-----GGTYYHRWTESDILSAAFGVLRARANHM 271

Query: 118 NHVIFF 101
             V FF
Sbjct: 272 ESVGFF 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,572,285
Number of Sequences: 5004
Number of extensions: 28565
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)