Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00530X
(401 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-63... 29 1.4
04_04_0016 - 22167780-22167873,22167978-22168272,22168380-221684... 29 1.8
04_04_1390 - 33184233-33184478,33184601-33184705,33184783-331848... 27 4.2
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259... 27 4.2
01_07_0162 + 41576824-41577438 27 4.2
12_02_0566 - 20531659-20531696,20533101-20534094 27 5.6
06_01_0433 - 3078576-3078780,3078797-3078951,3079782-3079821,307... 27 7.3
02_03_0065 - 14629676-14629804,14631119-14631247,14631383-146317... 27 7.3
12_01_0076 + 627796-627877,628706-628944,629129-629326,629415-62... 26 9.7
>08_01_0087 +
630355-630403,630502-630699,631858-631943,632238-632946,
633029-633194,633459-633934,634023-634873,635078-635987,
636597-636784
Length = 1210
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/77 (25%), Positives = 37/77 (48%)
Frame = -2
Query: 355 NYSNLDVVGTAALAANVPTPYKFELTFTLSRTLKTFTKLTVYCMFTLKLFLSGLYVHRGT 176
N S V + A N+ TP + L FT+ + + + C+ L L ++ +HR +
Sbjct: 75 NQSGAAVKESEASHLNI-TPRR--LPFTIINNVAHYGPNEIRCVLRLLLIMASKQLHRSS 131
Query: 175 ENNSKSLDQDVLDAPTT 125
S+D +V+ AP++
Sbjct: 132 YYVGTSIDNEVVCAPSS 148
>04_04_0016 -
22167780-22167873,22167978-22168272,22168380-22168455,
22168665-22168853,22168955-22169176,22169315-22169413,
22169502-22169582,22169753-22170060,22171611-22171950,
22172047-22172110,22172191-22172412,22172865-22173043
Length = 722
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = -2
Query: 337 VVGTAALAANVPTPYKF---ELTFTLSRTLKTFTKLTVYCMFTLKLFLSGLYVHRGTENN 167
+VG A+ N+P PY EL L ++ T + LS L + TE+
Sbjct: 453 IVGDVAVICNIPQPYTVRVCELCSLLRIDKQSLTSILQIYFKDNSQILSNLLKGKETESK 512
Query: 166 SKSLDQDV 143
K L+ D+
Sbjct: 513 RKQLESDI 520
>04_04_1390 -
33184233-33184478,33184601-33184705,33184783-33184890,
33184967-33185101,33185263-33185363,33185495-33185564,
33185642-33185758,33186001-33186138,33186371-33186439,
33186556-33186645,33186758-33186940,33187020-33187052
Length = 464
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 299 GWNVCR*GRCSNYIQI*VIAINCPITIKRHNT 394
GW V R G+ +N+++ ++AI+C + + T
Sbjct: 126 GWKVLREGKITNFMKSTMLAIDCEMVLCHDGT 157
>03_06_0282 -
32824950-32825135,32825247-32825505,32825651-32825901,
32826309-32826425,32826613-32826687,32826788-32827009,
32827396-32827509,32827694-32827801
Length = 443
Score = 27.5 bits (58), Expect = 4.2
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = -2
Query: 391 VVPLYRNGAINSNYSNLDVVGTAALAANVPTPYKFELTFTLSRTLKTFTKLTVYCMFTLK 212
++P G IN + +N AAN PT + + T +T T C LK
Sbjct: 285 LIPAALGGVINKDNANEIKAKYIIEAANHPTDPEADEASTSDSIWQTNTPTATKCTICLK 344
Query: 211 LFLS 200
FLS
Sbjct: 345 CFLS 348
>01_07_0162 + 41576824-41577438
Length = 204
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 188 TSWYRK*F*VTRPRCSRRADYKTQSRYFLLPSQAERSR 75
T W + +T PRC RRAD + +++L + SR
Sbjct: 139 TGWMMAEYEITDPRCYRRADDGEEDDFWVLCHVRKSSR 176
>12_02_0566 - 20531659-20531696,20533101-20534094
Length = 343
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +2
Query: 14 FLNVYKTRLGFQVLLTASTTLE---NAQLATVKENNVIASCSRRVENILV 154
FL K L Q+LL E + + E+N + +C RR+ NILV
Sbjct: 210 FLQGLKDELAVQLLLEDYENFEKLVDKAMQLESEHNRMTNCKRRIVNILV 259
>06_01_0433 -
3078576-3078780,3078797-3078951,3079782-3079821,
3079957-3080009,3080091-3080199,3080324-3080448,
3081112-3081201,3081280-3081342,3081453-3081544,
3081641-3081722,3081913-3082086,3082183-3082264,
3083100-3083224,3083312-3083389,3084047-3084402,
3085311-3085608
Length = 708
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 391 VVPLYRNGAINSNYSN 344
V+P Y NGA+N N++N
Sbjct: 172 VMPRYMNGALNKNFAN 187
>02_03_0065 -
14629676-14629804,14631119-14631247,14631383-14631736,
14631817-14632063,14632155-14632231,14632574-14632648,
14632721-14632822,14632966-14633084,14633538-14633627,
14634866-14635022,14635085-14635098,14635425-14635548,
14635628-14635678,14635793-14635891,14636962-14637072
Length = 625
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 132 GASRTSWSSDLELFSVPRCTYKPERNSFNVNIQ*TVSLVK 251
G T+ DL +F++PR T KP SF + VSL++
Sbjct: 249 GLKATAQVIDLHVFALPRITLKPLVPSFPCFAKIVVSLME 288
>12_01_0076 +
627796-627877,628706-628944,629129-629326,629415-629474,
629596-629739,631700-631864,632636-632734,633114-633182,
633274-633370,633994-634085,635021-635152,635446-635526,
636284-636400,636497-636598
Length = 558
Score = 26.2 bits (55), Expect = 9.7
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = -2
Query: 391 VVPLYRNGAINSNYSNLDVVGTAALAANVPTPYKFELTFTLSRTLKTFTKLTVYCMFTLK 212
V+PL GAI+ S+L + +L + L F+L K + ++ F+L
Sbjct: 249 VLPLRDEGAISLGLSSLPGLFAGSLLLTLVAAPVASLAFSLPSIPKPRALVFIHRFFSLS 308
Query: 211 LFLSGLYVHRGTENNSKSLDQ 149
L + + T +S S+ Q
Sbjct: 309 LLVFFVLWFASTPGHSPSISQ 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,405,788
Number of Sequences: 37544
Number of extensions: 158601
Number of successful extensions: 430
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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