Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00530X
         (401 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_16616| Best HMM Match : Phage_integrase (HMM E-Value=0.16)          27   4.3  
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   4.3  
SB_45259| Best HMM Match : CH (HMM E-Value=0.00071)                    27   5.7  
SB_20003| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_48119| Best HMM Match : TLD (HMM E-Value=2e-14)                     27   5.7  
SB_37969| Best HMM Match : COLFI (HMM E-Value=0.03)                    27   5.7  
SB_21632| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)                27   5.7  
SB_13104| Best HMM Match : Peptidase_C13 (HMM E-Value=1.5e-12)         27   5.7  
SB_11133| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 338 CSWNSGPSGKRSNPIQI*VNF-YVIENVKNFH*AHCLLYVYVETIPFWLVCTSW 180
           CSW SG  G +       +++ Y+ ++  + H    + Y   +  P+WLV  SW
Sbjct: 367 CSWGSGNRGCKGGYYNKAMSWIYLHDSSSSVHSVLVVGYGVEDGEPYWLVKNSW 420


>SB_16616| Best HMM Match : Phage_integrase (HMM E-Value=0.16)
          Length = 201

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 169 NSKSLDQDVLDAPTTRRNHVIFFYRRKLSVLESR 68
           N KSL +  +++P  +R    FF  RKL VL  R
Sbjct: 30  NKKSLWEKKINSPQAKRKLTNFFLTRKLEVLCER 63


>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 3369

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 223  FTLKLFLSGLYVHRGTENNSKSLDQD 146
            +T+++ L GL  HRGTE     L +D
Sbjct: 2191 YTIRVLLKGLPTHRGTEGKRDVLCED 2216


>SB_45259| Best HMM Match : CH (HMM E-Value=0.00071)
          Length = 1032

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -2

Query: 178 TENNSKSLDQDVLDAPTTRRNHVIFFYRRKLSVLESRRSGQQHLKT*PRFVHIQKKK 8
           TEN+ K+  +D+   PTT+ +      + K+ V+  R SG Q +    R   I  K+
Sbjct: 252 TENDRKTDFKDIYQLPTTKADSSAHVTKEKVQVI--RTSGGQGISEGSRVTRIITKR 306


>SB_20003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 155 RPRCSRRADYKTQSRYFLLPSQAERSRES*KRSTTLENLTS 33
           RPR +      +++   LLP  AERSR++  +  T E L S
Sbjct: 251 RPRSTELQYQGSKTEKKLLPKSAERSRQAKGKQITKEELKS 291


>SB_48119| Best HMM Match : TLD (HMM E-Value=2e-14)
          Length = 870

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 187 HRGTENNSKSLDQDVLDAPTTRRNHVIFFYRRKLSVLESRRSG 59
           +RGT    +  D+D LDA + +++H +  +R   S   S  SG
Sbjct: 13  NRGTPKPKELQDEDDLDARSEKQDHSVVEFRSNSSDPTSSTSG 55


>SB_37969| Best HMM Match : COLFI (HMM E-Value=0.03)
          Length = 405

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 316 AANVPTPYKFELTFT--LSRTLKTFTKLTVYCMFTLKLFLSGLYVHRGTE 173
           A   P  Y+ ++T+T      LKT T ++ YC   LK   +G  ++  T+
Sbjct: 264 AGEGPGSYRRDVTYTGVTVTQLKTLTSMSTYCEQFLKYECTGSILYSNTQ 313


>SB_21632| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)
          Length = 137

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 236 CLLYVYVETIPFWLVCTSWY 177
           C LYV +++ P W VC   Y
Sbjct: 20  CALYVIIQSTPTWSVCVVCY 39


>SB_13104| Best HMM Match : Peptidase_C13 (HMM E-Value=1.5e-12)
          Length = 281

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 262 TLKTFTKLTVYCMFTLK--LFLSGLYVHRGTENNSKSLDQDVLD 137
           T  ++ + +  C F  K   +L  +Y  +  EN+ KS D+D LD
Sbjct: 38  TASSYNESSYACYFDQKRRTYLGDVYSVKWMENSDKSFDKDPLD 81


>SB_11133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 379 YRNGAINSNYSNL--DVVGTAALAANVPTPYKFELTFTLSRTLK 254
           Y     N+ Y+N   D VGT  ++ + P P   E+T  L +T+K
Sbjct: 22  YNRRIKNARYNNRCPDFVGTRKMSDDCPGPVLDEITNFLMKTIK 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,400,644
Number of Sequences: 59808
Number of extensions: 198676
Number of successful extensions: 460
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)