Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00530X
         (401 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34802-4|CAA84335.4|  365|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z68301-2|CAA92625.1|  366|Caenorhabditis elegans Hypothetical pr...    26   8.8  

>Z34802-4|CAA84335.4|  365|Caenorhabditis elegans Hypothetical
           protein M88.4 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 214 KLFLSGLYVHRGTENNSKSLDQDVL 140
           +LFLSGL V R   N+  S++Q+ L
Sbjct: 158 RLFLSGLLVPRNNNNSEGSVNQNAL 182


>Z68301-2|CAA92625.1|  366|Caenorhabditis elegans Hypothetical
           protein W01B6.2 protein.
          Length = 366

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 253 TFTKLTVYCMFTLKLFLSGLYVHRGTENNSKSLDQDVLDAPTTRRNHVI-FFYRRKLSVL 77
           T++++ + C++ LK      ++HR  +  +  L  +  D+   R  H++ F   R  +V 
Sbjct: 127 TWSRIGIQCLYALKYVHDNGFIHRDVKPQNFLLGNET-DSERARIVHILDFGLARPFAVF 185

Query: 76  ESRRS 62
            +R +
Sbjct: 186 HAREN 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,669,655
Number of Sequences: 27780
Number of extensions: 158146
Number of successful extensions: 397
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)