Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00530X
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   2.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    20   9.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   9.2  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 311 CR*GRCSNYIQI 346
           CR GRCS+Y+Q+
Sbjct: 53  CR-GRCSSYLQV 63


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -2

Query: 274 TLSRTLKTFTKLTVYCMFTLKLFL 203
           ++S T+     +T+ C+F+ KL++
Sbjct: 881 SMSVTISLSASVTIACLFSPKLYI 904



 Score = 20.2 bits (40), Expect = 9.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 301 LERLPLGPLFQLHPNLSN 354
           L R+PL   F   P LSN
Sbjct: 233 LFRIPLVSFFSTSPELSN 250


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 152 PRCSRRADYKTQSRYFLLP 96
           P+    ADYK + +  LLP
Sbjct: 123 PQVDFVADYKIEGKVLLLP 141


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 71  TLENAQLATVKENNVIASCSRRVE 142
           T+EN   ATVK + V     R+VE
Sbjct: 682 TMENLTCATVKGSAVDMYFRRQVE 705


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,784
Number of Sequences: 438
Number of extensions: 2364
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)