Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00527
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9... 40 0.002
05_01_0062 + 440239-440325,441107-441183,441416-441643,441953-44... 29 2.6
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219... 29 3.4
11_06_0289 - 21969248-21973516 29 3.4
11_06_0185 + 21018045-21022307 29 3.4
11_04_0358 + 16725417-16725422,16725789-16725858,16727825-167286... 29 3.4
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953... 29 3.4
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 29 3.4
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260... 29 3.4
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820... 29 4.5
11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460 28 6.0
07_03_1510 + 27264999-27265371,27265485-27265546,27265768-272664... 28 6.0
03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,772... 28 6.0
11_06_0723 - 26688378-26688385,26689351-26689569,26690100-266901... 28 7.9
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910... 28 7.9
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 28 7.9
01_03_0207 - 13790801-13792057 28 7.9
>05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
9802-9902,10016-10651,10820-10899,11014-11673,
11787-12041,12154-12281,12515-12669,12735-12919,
13020-13049,13164-13239,13371-13504,13703-13994,
14400-14567,14647-14745,14843-15014,15103-15281
Length = 1352
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = -3
Query: 471 SLNDNENKYLASHIPDIPESCNEMKHSKNEQAEKNNLPKHDIGENNEDFEDYDADFETKT 292
S N +NK H P I E C HSK E+ E P D+GEN F+ D +K
Sbjct: 880 SFNSKDNK----HCP-INEYCGSHNHSKVEREEGELSPNGDVGENFGPFDGVSVDGVSKA 934
Query: 291 SADDSGNMLE 262
D + +L+
Sbjct: 935 KEDSTRRLLQ 944
>05_01_0062 +
440239-440325,441107-441183,441416-441643,441953-442176,
442250-442398,443102-443279,443348-443428,443523-443669,
443759-444483
Length = 631
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Frame = -3
Query: 522 SRMDSCVSSPNSSIYNNSLNDNENKYLASHIP-------DIPESCNEMKHSKNEQAEKNN 364
S DS + +S N N N ++ H+P D P EM HS E N
Sbjct: 459 SETDSSEADDETSELRNEPNATHNGFVQEHLPSGHKYWSDSPRRNIEMSHSAVEPHIGGN 518
Query: 363 LPKHDIGENNEDFEDYDADFETKTSAD-DSGNMLEEISSALKIKTT 229
+P + +N+ D D TS D + +M++ S + T+
Sbjct: 519 MPNGILKKNDTD----DTVSNLGTSVDLPNPSMIDRKSGVASVSTS 560
>12_01_0292 +
2193309-2193338,2193565-2193640,2193744-2195203,
2195479-2195505,2195794-2196024,2196523-2196692,
2197278-2197421,2198036-2198083,2198503-2198566
Length = 749
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 390 KNEQAEKNNLP-KHDIGENNEDFEDYDADFETKTSADDSG 274
K+ ++ K NLP + D G++ +F+D +F+ + DD G
Sbjct: 185 KDPKSVKFNLPPEDDFGDDGSEFDDEFDEFDDEDDFDDDG 224
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 399 KHSKNEQAEKNNLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEE 259
K +NE ++ K + E+ ED+DAD + ++ DD EE
Sbjct: 487 KEEQNEVRKETEGRKEQVAGEEEEKEDHDADNDEDSNDDDDDEEEEE 533
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 399 KHSKNEQAEKNNLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEE 259
K +NE ++ K + E+ ED+DAD + ++ DD EE
Sbjct: 486 KEEQNEVRKETEGRKEQVAGEEEEKEDHDADNDEDSNDDDDDEEEEE 532
>11_04_0358 +
16725417-16725422,16725789-16725858,16727825-16728693,
16729109-16729198,16730071-16730356,16730573-16730592
Length = 446
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 330 DFEDYDADFETKTSADDSGNMLEEISSA 247
D +DYD DFE ++DD G E A
Sbjct: 88 DDDDYDIDFEVDATSDDDGGFTVEDDDA 115
>11_03_0066 +
9529969-9530166,9530271-9530450,9530559-9531287,
9531554-9531706,9531803-9532238,9532322-9532501,
9532643-9532889,9533090-9533123,9533385-9533489,
9533833-9533967,9534220-9534399,9534504-9534626
Length = 899
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -3
Query: 399 KHSKNEQAEKNNLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEEISSALKIK 235
KH +EQ ++ + + D E +D ED D + E DD + +E ALK+K
Sbjct: 81 KHKLSEQEPEDEVEEEDEDEYEDDVEDEDEEVEE----DDDNDFME---PALKVK 128
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Frame = -3
Query: 522 SRMDSCVSSPNSSIYNNSLNDNENKYLA-----SHIPDIPES---C--NEMKHSKNEQAE 373
S +DS S Y+N + D+E L IP++ E C +E H K EQ +
Sbjct: 224 SSLDSFAYPRPRSSYDNVVTDDELARLQRVREEEGIPELEEEDDECQQHEQVHQKEEQVD 283
Query: 372 KNNLPKHDIGENNEDFEDYDADFE 301
++ D ++++D +D D D E
Sbjct: 284 DDDNDDSDDDDDDDDDDDDDGDDE 307
>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
2602637-2602810,2603032-2603098,2603735-2603757,
2603899-2604001,2604087-2604848,2605098-2605292,
2605496-2606115,2606429-2606480,2606558-2607197,
2608366-2608574,2608660-2609189,2609500-2609566,
2609651-2609728,2610415-2610483,2610569-2610643
Length = 2021
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 563 YYNFTNASSITIDCPEWIHAFR 498
YY F S++ P+W H FR
Sbjct: 955 YYRFCKVSALNAQLPQWTHVFR 976
>07_03_0943 -
22778877-22780970,22781376-22781480,22781481-22782059,
22782149-22782187,22782340-22782372
Length = 949
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = -3
Query: 501 SSPNSSIYNNSLNDNENKYLASHIPDIPESCNEMKHSKNEQAEKNNLP 358
S N+ + S++ +E + +PDI SCN + + Q+ ++ P
Sbjct: 748 SDKNTHTMDRSIHSSETNRMDDCLPDINASCNGLLSEQRRQSTRSRPP 795
>11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460
Length = 515
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -3
Query: 390 KNEQAEKNNLP--KHDIGENNEDFEDYDADFETKTSADDSG 274
K+ ++ K NLP + D G++ +F+D +F+ + DD G
Sbjct: 186 KDPKSVKFNLPPPEDDFGDDGSEFDDEFDEFDDEDDFDDDG 226
>07_03_1510 +
27264999-27265371,27265485-27265546,27265768-27266436,
27266842-27267288
Length = 516
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = -3
Query: 453 NKYLASHIPDIPESCNEMKHSKNEQAEKNNLPKHDIGENNEDFEDYDADFETKT 292
+KY+ D ++ E + + + + KHDI + E ED D E T
Sbjct: 119 DKYMEGERSDQGKAAGETHQFNTDDGQIDKIKKHDIAGDQEPTEDIDNLLEAPT 172
>03_02_0349 -
7722461-7723069,7723494-7724221,7724281-7724641,
7724751-7725072,7725183-7725661,7726157-7726430,
7726598-7726884,7726966-7727388,7727545-7727890,
7728011-7728328,7729817-7731081
Length = 1803
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -3
Query: 504 VSSPNSSIYNNSLNDNENKYLASHIPDIPESCNEMKHSKNEQA 376
+ P+S + NDN+ + SH D + C+E S +E +
Sbjct: 581 IPDPDSPKVESEQNDNDGGHEISHTEDNGDECSEASDSHSEMS 623
>11_06_0723 -
26688378-26688385,26689351-26689569,26690100-26690106,
26690194-26690256,26690329-26690400,26690507-26691681,
26692024-26692626,26692643-26692781
Length = 761
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 653 ETISNSVNNDSYDALDRSDNDPKGRSKIDDY 561
E IS++++N YD+L+R D D ID++
Sbjct: 250 EVISSTLSNVVYDSLNRDDFDKGWMKMIDEF 280
>03_06_0520 -
34487664-34488274,34488785-34488974,34489585-34491045,
34491149-34491163
Length = 758
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = -3
Query: 546 RLEYHYRLSRMDSCVSSPNSSIYNN-SLNDNENKYLASHIPDIPESCNEMKHSKNEQAEK 370
RL H L + SC SP+ ++N S++ N ++ D P ++++
Sbjct: 362 RLPPHSLLDKNSSCERSPHDIFFSNTSISHNSGQFHFDSFWDKPTRQQISSPTQDDLRNA 421
Query: 369 NNLPKHDIGENNEDFEDYD 313
+ H + ++ F YD
Sbjct: 422 SCARYHTLEQHRSSFPSYD 440
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = -3
Query: 501 SSPNSSIYNNSL---NDNENKYLASHIPDIPESCNEMKHSKNEQ-AEKNNLPKHDIGENN 334
+S S++ + S+ ND+ + AS PE+ E +H +N Q E P D+G+
Sbjct: 678 ASDRSNVVDQSVTQTNDDTSSNTASETTQTPETFTEGEHHQNLQLVEFKEKPLDDLGDAK 737
Query: 333 E 331
E
Sbjct: 738 E 738
>01_03_0207 - 13790801-13792057
Length = 418
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -1
Query: 554 FTNASSITIDCPEWIHAFRLQIAAFITIR*MIMKTNILLVTFRIFLNRV 408
FT+ SI + P W+ QI F ++ ++ +L+ + L V
Sbjct: 312 FTSVPSIALQLPRWVSRISAQIRLFASVLTTALQLGLLVPIIYVLLKSV 360
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,187,467
Number of Sequences: 37544
Number of extensions: 277849
Number of successful extensions: 919
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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