Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00527
(677 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30690.1 68415.m03742 expressed protein contains Pfam profile... 36 0.025
At5g20310.1 68418.m02417 hypothetical protein 34 0.099
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 32 0.30
At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger) fa... 32 0.30
At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger) fa... 32 0.30
At5g13950.1 68418.m01631 expressed protein 31 0.70
At5g64030.1 68418.m08039 dehydration-responsive protein-related ... 31 0.93
At3g52115.1 68416.m05720 hypothetical protein 31 0.93
At3g11200.2 68416.m01359 PHD finger family protein contains Pfam... 31 0.93
At3g11200.1 68416.m01360 PHD finger family protein contains Pfam... 31 0.93
At1g77840.1 68414.m09070 eukaryotic translation initiation facto... 31 0.93
At2g45100.1 68415.m05613 transcription factor IIB (TFIIB) family... 30 1.2
At1g74160.1 68414.m08589 expressed protein 30 1.2
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 30 1.6
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR... 29 2.1
At3g57990.1 68416.m06463 expressed protein 29 2.1
At5g09420.1 68418.m01091 chloroplast outer membrane translocon s... 29 2.8
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil... 29 3.7
At2g12875.1 68415.m01402 hypothetical protein 29 3.7
At2g01280.1 68415.m00042 transcription factor IIB (TFIIB) family... 29 3.7
At1g12980.1 68414.m01507 AP2 domain-containing transcription fac... 29 3.7
At5g49630.1 68418.m06141 amino acid permease 6 (AAP6) identical ... 28 4.9
At2g22490.1 68415.m02668 cyclin delta-2 (CYCD2) identical to SP|... 28 4.9
At1g29470.1 68414.m03605 dehydration-responsive protein-related ... 28 4.9
At3g58710.2 68416.m06544 WRKY family transcription factor contai... 28 6.5
At3g11870.1 68416.m01455 protein kinase-related contains eukaryo... 28 6.5
At3g10140.1 68416.m01216 recA family protein contains Pfam profi... 28 6.5
At1g76420.1 68414.m08883 no apical meristem (NAM) family protein... 28 6.5
At1g34270.1 68414.m04253 exostosin family protein contains Pfam ... 28 6.5
At1g22870.1 68414.m02855 protein kinase family protein contains ... 28 6.5
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 27 8.6
At5g57340.2 68418.m07162 expressed protein 27 8.6
At5g57340.1 68418.m07163 expressed protein 27 8.6
At5g24500.1 68418.m02887 expressed protein 27 8.6
At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) / flav... 27 8.6
At2g33850.1 68415.m04155 expressed protein contains 1 transmembr... 27 8.6
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 27 8.6
At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to calr... 27 8.6
>At2g30690.1 68415.m03742 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593; expression
supported by MPSS
Length = 788
Score = 35.9 bits (79), Expect = 0.025
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Frame = -3
Query: 540 EYHYRLSRMDSCVSSPNSSIYNNSLNDNENKYLASHIPDIPESCNEMKHSKNEQAEKNNL 361
E+ + + +S + S+ N +D EN+ P I + ++ + E++ +
Sbjct: 427 EFEAAIEQKESDHMDVSGSVANEPSSDEENEVEGDSKPLISNNMSDSLEQEQSGEEESEV 486
Query: 360 PKHDIGE---NNEDFEDYDADFETKTSADDSGNMLEEISS 250
++++ E +NE+ ++ + E TS +SG+ EE SS
Sbjct: 487 NENNVAEEYFSNEEEDEVNGHTEPLTSKSESGSFAEEQSS 526
>At5g20310.1 68418.m02417 hypothetical protein
Length = 394
Score = 33.9 bits (74), Expect = 0.099
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -3
Query: 486 SIYNNSLNDNENKYLASHIPDIPESCNEMKHSKNEQAEKNNL 361
SIY NSL+D +N LAS + + ++ EM+ K E E N+
Sbjct: 258 SIYLNSLSDEKNCTLASPLSPVDDATAEMRRLKKELKETMNM 299
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 32.3 bits (70), Expect = 0.30
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Frame = -3
Query: 492 NSSIYNNSLNDNENKYLASHIPDIPESCNEMKHSKN-----EQAEKNNLPKHDIGENNED 328
+SS S +++ N+ ++ D+ + E HS + E +++ HD+G +++D
Sbjct: 105 DSSATEESSDESINQLTIEYLGDVSDDDGEDSHSDHDLGASEDDGEDSHSDHDLGASDDD 164
Query: 327 FEDYDADFETKTSADDSGN 271
ED +D + + DD GN
Sbjct: 165 GEDSHSDHDL-GARDDDGN 182
>At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 713
Score = 32.3 bits (70), Expect = 0.30
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -3
Query: 471 SLNDNENKYLASHIPD--IPESCNEMKHSKNEQAEKNNLPKHDIGENNEDFEDYDADFET 298
S+ + N ++ H+P IP CN KN+ +N PKH GE +ED E D D
Sbjct: 82 SIYKSLNAAVSVHLPQLQIPNDCNY----KNDALNNSNSPKH--GE-SEDSEMTDKDVSK 134
Query: 297 KTSADDSGN 271
++ DS +
Sbjct: 135 RSGGTDSSS 143
>At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 714
Score = 32.3 bits (70), Expect = 0.30
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -3
Query: 471 SLNDNENKYLASHIPD--IPESCNEMKHSKNEQAEKNNLPKHDIGENNEDFEDYDADFET 298
S+ + N ++ H+P IP CN KN+ +N PKH GE +ED E D D
Sbjct: 82 SIYKSLNAAVSVHLPQLQIPNDCNY----KNDALNNSNSPKH--GE-SEDSEMTDKDVSK 134
Query: 297 KTSADDSGN 271
++ DS +
Sbjct: 135 RSGGTDSSS 143
>At5g13950.1 68418.m01631 expressed protein
Length = 939
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 426 DIPESCNEMKHSKNEQ-AEKNNLPKHDIGENNEDFEDYDADFETKTSADDSG 274
++ E CN K +Q A +N L KHD+ NN + + + + +DSG
Sbjct: 399 ELKEKCNLWMEDKQQQYAAENPLQKHDVQYNNGESLNPNQSGDMAPDGEDSG 450
>At5g64030.1 68418.m08039 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 829
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = -3
Query: 426 DIPESCNEMKHSKNEQAEKNNLPKHDIGENNEDFEDYDADFETKTSADD 280
D+ ++ +E NE+ K +++GE+ E+ + +++D K S DD
Sbjct: 156 DLKDNSDEENPDTNEKQTKPETEDNELGEDGENQKQFESDNGEKKSIDD 204
>At3g52115.1 68416.m05720 hypothetical protein
Length = 588
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 498 SPNSSIYNNSLNDNENKYLASHIPDIPESCNEMKHSKN-EQAEKNNLPKHDIGENNE 331
+P+S ++ +SL D ENK + H S E KHS+ E A+K + G N E
Sbjct: 345 TPDSVLHQSSLED-ENKEIGQHEKSAISSYLERKHSETAEGADKVRIGTGSSGNNYE 400
>At3g11200.2 68416.m01359 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 233
Score = 30.7 bits (66), Expect = 0.93
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = -3
Query: 489 SSIYNNSLNDNENKYLASHIPDIPESCNEMKHSKNEQAEKNNLPKHDIGENNEDFEDYDA 310
S + LN NE K L S I D+P + + K A K+N P D G + +
Sbjct: 94 SFYFGARLNRNERKRLFSLINDLPTLFDVVTGRK---AMKDNKPSSDSGSKSRNGTKRSI 150
Query: 309 DFETKTS 289
D +TK+S
Sbjct: 151 DGQTKSS 157
>At3g11200.1 68416.m01360 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 246
Score = 30.7 bits (66), Expect = 0.93
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = -3
Query: 489 SSIYNNSLNDNENKYLASHIPDIPESCNEMKHSKNEQAEKNNLPKHDIGENNEDFEDYDA 310
S + LN NE K L S I D+P + + K A K+N P D G + +
Sbjct: 107 SFYFGARLNRNERKRLFSLINDLPTLFDVVTGRK---AMKDNKPSSDSGSKSRNGTKRSI 163
Query: 309 DFETKTS 289
D +TK+S
Sbjct: 164 DGQTKSS 170
>At1g77840.1 68414.m09070 eukaryotic translation initiation factor
5, putative / eIF-5, putative similar to SP|P55876
Eukaryotic translation initiation factor 5 (eIF-5) {Zea
mays}; contains Pfam profiles PF02020:
eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in
IF2B/IF5
Length = 437
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Frame = -3
Query: 405 EMKHSKNEQAEKNNLPKHDIG--ENNEDFEDYD-ADFETKTSADDS-GNMLEEISS 250
+ K SKN ++++ PKHD E +ED +D D +++T TS + + M+E++S+
Sbjct: 192 DSKTSKNHSSDEDISPKHDENALEVDEDEDDDDGVEWQTDTSREAAEKRMMEQLSA 247
>At2g45100.1 68415.m05613 transcription factor IIB (TFIIB) family
protein contains Pfam domain, PF00382: Transcription
factor TFIIB repeat
Length = 565
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 399 KHSKNEQA-EKNNLPKHDIGENNEDFEDYDADFE 301
K SK E EK +H+I EN ++ EDY A +E
Sbjct: 497 KRSKTETVMEKKKKEEHEIVENEQEEEDYAAPYE 530
>At1g74160.1 68414.m08589 expressed protein
Length = 1030
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 528 RLSRMDSCVSSPNSSIYNNSLNDNENKYLASHIPDIPESCNEM 400
R+S SC SSP+SS +N + + + Y ++ + P S EM
Sbjct: 91 RVSFSSSCSSSPSSSEFNRGVQPDASAYDRANFQESPTSDPEM 133
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Frame = -3
Query: 486 SIYNNSLND--NENKYLASHIPDIPESCNEMKHSKNEQAEKNNLPKHDIGENNEDFEDYD 313
S +N LND L+S IP+ P + E+N L +E F + D
Sbjct: 703 SYSSNQLNDLHEPTLCLSSEIPETPTQQPSGEEDNGRGEEENQLVNPQDLPQHESFYEDD 762
Query: 312 ADFETKTSADDSGNMLEEISSALKIK 235
E ++AD ++L SS +K
Sbjct: 763 VSSEYFSAADSHQSILVSFSSRCVLK 788
>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1127
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 528 RLSRMDSCVSSPNSSIYNNSLNDNENKYLASHIPDIPESCN 406
+LS S V P+S Y N LND + Y H+ IP N
Sbjct: 662 KLSSCSSLVELPSSIQYLNKLNDLDMSY-CDHLETIPSGVN 701
>At3g57990.1 68416.m06463 expressed protein
Length = 367
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = -3
Query: 429 PDIPESCNEMKHSKNEQAEKNNLPKHDIGENNEDFEDYDA-DFETKTSAD-------DSG 274
P P + + HSK ++E+NN ++ NN D E T++D + G
Sbjct: 294 PYSPATIDYGSHSKYRESERNNNNNNNNNNNNNGRSRADRWSSERTTTSDYGGKKSKEEG 353
Query: 273 NMLEEISSALK 241
N+ EE+ ALK
Sbjct: 354 NVAEELKKALK 364
>At5g09420.1 68418.m01091 chloroplast outer membrane translocon
subunit, putative similar to component of chloroplast
outer membrane translocon Toc64 [Pisum sativum]
GI:7453538; contains Pfam profiles PF01425: Amidase,
PF00515: TPR Domain
Length = 603
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/86 (20%), Positives = 36/86 (41%)
Frame = -3
Query: 492 NSSIYNNSLNDNENKYLASHIPDIPESCNEMKHSKNEQAEKNNLPKHDIGENNEDFEDYD 313
N S Y + N +Y+AS++P + E C + S+N + L + +F+
Sbjct: 273 NLSGYKTPKHVNVGQYVASNVPSLAEFCEQSGKSQNSASTLRALSSVMLAIQRHEFKTNH 332
Query: 312 ADFETKTSADDSGNMLEEISSALKIK 235
++ + ++ +ALK K
Sbjct: 333 EEWWQTCKSFLGPRFSNDVVTALKSK 358
>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
(Mutarotase) from Acinetobacter calcoaceticus; contains
Pfam profile PF01263 Aldose 1-epimerase
Length = 490
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 396 HSKNEQAEKNNLPKHDIGENNEDFEDYDADFETKTSADD 280
H K++ EK + K G N++D D D D + DD
Sbjct: 106 HDKDDDDEKKHKDKKKDGHNDDDDSDDDTDDDDDDDDDD 144
>At2g12875.1 68415.m01402 hypothetical protein
Length = 325
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = -3
Query: 510 SCVSSPNSSIYNNSLNDNENKYLASHIPDIPESCNEMKHSKNEQAEKNNLPKHDIGENNE 331
S P+SS N ++ + + + E+ E K KNE+ EK+ + + E E
Sbjct: 162 SSTEEPSSSEQNKAIEGGGTEEPILALTPVLEAVEEEKSYKNEE-EKSEKDEEEKSE-EE 219
Query: 330 DFEDYDADFETKTSADDSGN 271
+ E+ + + E K + GN
Sbjct: 220 ESEEEEKEEEEKEEEKEEGN 239
>At2g01280.1 68415.m00042 transcription factor IIB (TFIIB) family
protein contains Pfam domain, PF00382: Transcription
factor TFIIB repeat
Length = 561
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = -3
Query: 528 RLSRMDSCVSSPNSSIYNNSLNDNENKYLASHIPD-IPESCNEMKHSKNEQAEKNNLPKH 352
R R + ++P S+ + + H+ D + ++ K + E + +H
Sbjct: 464 RRKRAEEAKNAPPSATATEASYTETQRVNQHHVLDELLDTSPTQKKPRTETVTEKKKEEH 523
Query: 351 DIGENNEDFEDYDADFETKTSADD 280
+I E+ ED EDY A + +D
Sbjct: 524 EIVEDEEDEEDYAAPHADENFYED 547
>At1g12980.1 68414.m01507 AP2 domain-containing transcription
factor, putative / enhancer of shoot regeneration (ESR1)
similar to gb|D38124 EREBP-3 from Nicotiana tabacum and
contains PF|00847 AP2 domain; identical to cDNA enhancer
of shoot regeneration ESR1 GI:18028939, enhancer of
shoot regeneration ESR1 [Arabidopsis thaliana]
GI:18028940
Length = 328
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -3
Query: 549 QRLEYHYRLSRMDSCVSSPNSSIYNNSLNDNENKYLASHIPDIPESCNEMKHS 391
QR+ + D+ SS ++ YNNS N + + Y AS + S NE S
Sbjct: 159 QRIYNTQSIFLRDASCSSRKTTPYNNSFNGSSSSYSASKTACVSYSENENNES 211
>At5g49630.1 68418.m06141 amino acid permease 6 (AAP6) identical to
amino acid permease 6 (AAP6) [Arabidopsis thaliana]
GI:1769887
Length = 481
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = -3
Query: 390 KNEQAEKNNLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEEI 256
K + + P+H+IG+ N++F++ D T T S +++ +
Sbjct: 4 KKSMFVEQSFPEHEIGDTNKNFDEDGRDKRTGTWMTGSAHIITAV 48
>At2g22490.1 68415.m02668 cyclin delta-2 (CYCD2) identical to
SP|P42752 Cyclin delta-2 {Arabidopsis thaliana}
Length = 361
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 543 LEYHYRLSRMDSCVSSPNSSIYNNSLNDNENK 448
L Y ++SC +S SS NN+ N+N NK
Sbjct: 325 LSYRSEERTVESCTNSSQSSPDNNNNNNNSNK 356
>At1g29470.1 68414.m03605 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 770
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = -3
Query: 426 DIPESCNEMKHSKNEQAEKNNLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEEISSA 247
++ NE K + E+N+ K + E ++F+D + D + K + E +
Sbjct: 87 EVVTETNEEKTDPEKSGEENSGEKTESAEERKEFDDKNGDGDRKNGDGEKDTESESDETK 146
Query: 246 LKIKT 232
K KT
Sbjct: 147 QKEKT 151
>At3g58710.2 68416.m06544 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 271
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -3
Query: 465 NDNENKYLASHIPDIPESCNEMKHSKNEQAEKNNLPKHDIGENNEDFE 322
+D E++ +P+ P SC + K SK ++ N+ K + D E
Sbjct: 11 DDEEDETYNDVVPESPSSCEDSKISKPTPKKRRNVEKRVVSVPIADVE 58
>At3g11870.1 68416.m01455 protein kinase-related contains eukaryotic
protein kinase domain, INTERPRO:IPR000719
Length = 554
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 459 NENKYLASHIPDIPESCNEMKHSKNEQAEKNNLPKHDIGENNE 331
NE K + P + S + +KNEQ EK + P +GE NE
Sbjct: 33 NEKKRDKNSAPRVSASGED--GTKNEQVEKKSDPSGGLGEENE 73
>At3g10140.1 68416.m01216 recA family protein contains Pfam profile:
PF00154 recA bacterial DNA recombination protein
Length = 389
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 285 LRLFLSQSQRHNLRNLHYFHRYRVSVNYSSLPVH 386
L +FL+Q + H N+H+ H V+ ++LP H
Sbjct: 245 LIVFLNQVRSHVKSNMHFPHAEEVTCGGNALPFH 278
>At1g76420.1 68414.m08883 no apical meristem (NAM) family protein
N-term similar to N-term of NAM GB:CAA63101 [Petunia x
hybrida] (apical meristem formation), CUC2 GB:BAA19529
[Arabidopsis thaliana], GRAB2 protein GB:CAA09372
[Triticum sp.]
Length = 334
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 345 GENNEDFEDYDADFETKTSADDSGNMLE 262
G NN D +D+D + KT +GN ++
Sbjct: 266 GNNNNDEDDFDFNLGVKTEQSSNGNEID 293
>At1g34270.1 68414.m04253 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 477
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -3
Query: 513 DSCVSSPNSSIYNNSLNDNENKYLASHIPDIPESCN 406
+S +S+PN SI +N+L + N Y+A ++P S N
Sbjct: 38 NSLISNPNPSISHNTLQNGINVYVA----ELPRSLN 69
>At1g22870.1 68414.m02855 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 913
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +3
Query: 297 LSQSQRHNLRNLHYFHRYRVSVNYSSLPVHFLNVSFHYTIQE 422
+SQ+Q NL NL FH V S LP L S +YT E
Sbjct: 218 ISQAQDGNLDNLQSFHYSEYDVEDSILP---LQPSLNYTAPE 256
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 351 DIGENNEDFEDYDADFETKTSADDSGNMLEEISSALK 241
D+GE + D E + D + + DD+ L+E+ LK
Sbjct: 15 DVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLK 51
>At5g57340.2 68418.m07162 expressed protein
Length = 256
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 522 SRMDSCVSSPNSSIYNNSLNDNEN 451
S D+C + N+++YNNS N+ E+
Sbjct: 197 SSSDNCNNQSNNNLYNNSNNNQES 220
>At5g57340.1 68418.m07163 expressed protein
Length = 238
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 522 SRMDSCVSSPNSSIYNNSLNDNEN 451
S D+C + N+++YNNS N+ E+
Sbjct: 179 SSSDNCNNQSNNNLYNNSNNNQES 202
>At5g24500.1 68418.m02887 expressed protein
Length = 334
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 477 NNSLNDNENKYLASHIPDIPESCNEMKHSKNEQAEKNNLPKHDIGENNE 331
+ S++DN +Y I D PES N + ++ ++ + H +N+E
Sbjct: 276 STSVSDNNPRYNVEEIHDEPESSNVSRRLLSKPRKEGSFGIHTSKKNSE 324
>At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) /
flavin-type blue-light photoreceptor (HY4) contains Pfam
PF03441: FAD binding domain of DNA photolyase; member of
Pfam PF00875: deoxyribodipyrimidine photolyase
superfamily; 99% identical to Cryptochrome 1 apoprotein
(Blue light photoreceptor) (flavin-type blue-light
photoreceptor) (SP:Q43125) [Arabidopsis thaliana]
Length = 681
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 247 IENKNDLSIPNLDPERLCPNRNGEDKII 164
IE D+++ +P RL PNR ED+++
Sbjct: 521 IEFPRDITMEETEPTRLNPNRRYEDQMV 548
>At2g33850.1 68415.m04155 expressed protein contains 1 transmembrane
domain; similar to Protein E6 (Swiss-Prot:Q01197)
[Gossypium hirsutum]
Length = 267
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -3
Query: 492 NSSIYNNSLNDNENKYLASHIPDIPESCNEMKHSKNEQAEKNNLPK-HDIGENNEDFEDY 316
N + NN DN N + P + E+ + KN K + PK +I +NN+D Y
Sbjct: 85 NEELNNNKYEDNVNYDDSFSTPSLSETAQTQESYKN---YKESYPKTTEIYDNNKDTSYY 141
Query: 315 D 313
+
Sbjct: 142 E 142
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2)
{Homo sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 396 HSKNEQAEKNNLPKHDIGENNEDFEDYDADFETKTSADDSG 274
H + + N D E ++ + DADFE +ADD G
Sbjct: 227 HYSDSNHDHNGDADMDYEEEEDEDDPEDADFEPYDAADDGG 267
>At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to
calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
Length = 425
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/85 (23%), Positives = 38/85 (44%)
Frame = -3
Query: 483 IYNNSLNDNENKYLASHIPDIPESCNEMKHSKNEQAEKNNLPKHDIGENNEDFEDYDADF 304
+ + SL DN L S P+ + E K++ AEK + + E+ +D A+
Sbjct: 325 VKSGSLFDN---VLVSDDPEYAKKLAEETWGKHKDAEKAAFDEAEKKREEEESKDAPAES 381
Query: 303 ETKTSADDSGNMLEEISSALKIKTT 229
+ + A+D N ++ + K + T
Sbjct: 382 DAEEEAEDDDNEGDDSDNESKSEET 406
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,230,301
Number of Sequences: 28952
Number of extensions: 253547
Number of successful extensions: 1002
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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