Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00526
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc...   125   9e-30
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    56   8e-09
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    42   1e-04
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    27   4.2  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   7.4  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    26   7.4  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    26   7.4  
SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.7  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   9.7  
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    25   9.7  

>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 177

 Score =  125 bits (301), Expect = 9e-30
 Identities = 57/84 (67%), Positives = 68/84 (80%), Gaps = 1/84 (1%)
 Frame = +1

Query: 256 SDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDN- 432
           SDL  MQ+CNL  LPENYQ+KYY YH +SWP LSYVA D KG +VGYVLAKMEE+ +D  
Sbjct: 9   SDLTGMQNCNLHNLPENYQLKYYLYHAISWPMLSYVATDPKGRVVGYVLAKMEEEPKDGI 68

Query: 433 RHGHITSLAVKRSHRRLGLAQKLM 504
            HGHITS++V RS+R LGLA++LM
Sbjct: 69  PHGHITSVSVMRSYRHLGLAKRLM 92



 Score = 82.2 bits (194), Expect = 8e-17
 Identities = 38/61 (62%), Positives = 47/61 (77%)
 Frame = +3

Query: 519 AMVECFQAKYVSLHVRKSNRAALNLYTNSLGFKILEIEPKYYADGEDAYSMMRDLSAFAV 698
           AMVE + AKY+SLHVRKSNRAA++LY ++L F +  IE KYYADGEDAY+M +D S    
Sbjct: 98  AMVEVYGAKYMSLHVRKSNRAAIHLYRDTLQFDVQGIESKYYADGEDAYAMHKDFSTLKF 157

Query: 699 D 701
           D
Sbjct: 158 D 158


>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 55.6 bits (128), Expect = 8e-09
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
 Frame = +1

Query: 256 SDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGH--IVGYVLAKMEEDGED 429
           +DL +  + NL  L E + + +Y  +   WP L  V E +     ++GY++ K E  G++
Sbjct: 10  TDLFSFNNINLDPLTETFNISFYLSYLNKWPSLCVVQESDLSDPTLMGYIMGKSEGTGKE 69

Query: 430 NRHGHITSLAVKRSHRRLGLAQKLMN 507
             H H+T++ V  + RRLGLA+ +M+
Sbjct: 70  -WHTHVTAITVAPNSRRLGLARTMMD 94


>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 23/69 (33%), Positives = 33/69 (47%)
 Frame = +1

Query: 295 LPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLAVKRSH 474
           L E Y    Y Y    WP+ S+VA D     +G V+ K +        G+I  LA+ + +
Sbjct: 23  LSEPYSKYVYRYFVHQWPEFSFVALDND-RFIGAVICKQDVHRGTTLRGYIAMLAIVKEY 81

Query: 475 RRLGLAQKL 501
           R  G+A KL
Sbjct: 82  RGQGIATKL 90


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 349 GAKKVHGRSNISSDSSLADTISC 281
           G K VHG  N++S  +++D + C
Sbjct: 577 GGKAVHGLVNLASSRNVSDRVKC 599


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 444 VTMTIILTVLFHFCQNISNNMS 379
           +  +I+LT+LF+F  N+S+ M+
Sbjct: 278 IPFSIVLTILFYFDHNVSSVMA 299


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 161 TYHLVVLEQIEIWINSTSKQCTNFKI*LIGEVHKIKSLEYLL*PNFLKY 15
           T H +V  +  +W+ S S Q T   + ++  V K  S+E LL P   K+
Sbjct: 293 TLHDLVSTRCSVWLTSPSSQRTTKDLEVLNNVLK-DSIEPLLLPTVNKF 340


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 16  YFKKFGYSRYSKDLIL*TSPI 78
           YF++FGY+ Y   L+L  +PI
Sbjct: 343 YFRRFGYNDYQLYLLLSCAPI 363


>SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 87

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 701 INCKSTQISH--HGIRIFSISIVLWLNF 624
           I  KS+   H  HGI IFS SI L+L F
Sbjct: 51  IGVKSSWSRHLIHGINIFSFSISLFLIF 78


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 711 QFYYQLQKHSDLASWNTHLLHQHSTLAQFL 622
           Q Y+ +  HS + +  +HLL  H  L ++L
Sbjct: 130 QVYHLIDNHSCIQTAVSHLLRNHQALFKYL 159


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 432 IILTVLFHFCQNISNNMSFFIFSYITELGP 343
           ++LT L H    + +N + F+  Y+ +L P
Sbjct: 252 VVLTTLMHMAWALLDNPNLFVEPYVQQLMP 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,823
Number of Sequences: 5004
Number of extensions: 59425
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)