Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00526
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227 138 5e-33
03_05_0805 - 27839576-27839667,27839763-27839823,27840082-278401... 63 2e-10
11_05_0016 - 18410889-18411104,18411326-18411381,18412883-184130... 45 6e-05
04_01_0572 + 7404842-7405502,7405581-7406143,7406338-7406479,740... 32 0.47
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 31 0.83
10_08_0529 - 18565749-18565804,18566022-18566128,18566206-185664... 31 0.83
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 31 1.1
01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739 30 2.5
03_04_0167 + 17936598-17936763,17938735-17938831,17938919-179390... 29 3.3
03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550... 29 4.4
11_06_0203 + 21186905-21187986,21189022-21189398,21189735-21189850 29 5.8
08_02_0936 - 22771416-22771702,22772297-22772393,22772951-22773847 28 7.7
04_01_0212 - 2654691-2656976 28 7.7
>04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227
Length = 227
Score = 138 bits (334), Expect = 5e-33
Identities = 64/86 (74%), Positives = 70/86 (81%)
Frame = +1
Query: 250 TTSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGED 429
T DL+ MQ CNL+CLPENYQMKYY YH LSWPQL +VAED G IVGYVLAKMEED +
Sbjct: 8 TIDDLLAMQACNLMCLPENYQMKYYLYHMLSWPQLLFVAEDYGGRIVGYVLAKMEEDPSE 67
Query: 430 NRHGHITSLAVKRSHRRLGLAQKLMN 507
HGHITSLAV RSHR+LGLA KLM+
Sbjct: 68 PCHGHITSLAVLRSHRKLGLATKLMS 93
Score = 83.4 bits (197), Expect = 2e-16
Identities = 37/66 (56%), Positives = 52/66 (78%)
Frame = +3
Query: 486 ISSETHESASLAMVECFQAKYVSLHVRKSNRAALNLYTNSLGFKILEIEPKYYADGEDAY 665
++++ +A AM + F A+YVSLHVR+SNRAA NLYT++LG++I ++E KYYADGEDAY
Sbjct: 87 LATKLMSAAQAAMDQVFGAEYVSLHVRRSNRAAFNLYTSTLGYQIHDVEAKYYADGEDAY 146
Query: 666 SMMRDL 683
M + L
Sbjct: 147 DMRKPL 152
>03_05_0805 -
27839576-27839667,27839763-27839823,27840082-27840151,
27841167-27841299,27841928-27842018,27842097-27842174
Length = 174
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/83 (36%), Positives = 46/83 (55%)
Frame = +1
Query: 259 DLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRH 438
DL+ NL L E + M +Y + WP + A ++GY++ K+E GE + H
Sbjct: 11 DLLRFSSVNLDHLTETFNMSFYMTYMARWPDYFHAAVSPGDRVMGYIMGKVEGQGE-SWH 69
Query: 439 GHITSLAVKRSHRRLGLAQKLMN 507
GH+T+++V RR LA+KLMN
Sbjct: 70 GHVTAVSVATEFRRQKLAKKLMN 92
Score = 33.9 bits (74), Expect = 0.16
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 537 QAKYVSLHVRKSNRAALNLYTNSLGFKILEIEPKYYADGEDAYSMMRDLS 686
+A +V L VR SN A+ +Y LG+ + +YY+ ED M + LS
Sbjct: 103 KAYFVDLFVRASNMPAIRMY-EKLGYVVYRRVLRYYSGEEDGLDMRKALS 151
>11_05_0016 -
18410889-18411104,18411326-18411381,18412883-18413009,
18413113-18413307
Length = 197
Score = 45.2 bits (102), Expect = 6e-05
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +1
Query: 295 LPENYQMKYYFYHGLSWPQLSYVAEDEK-GHIVGYVLAKMEEDGEDNRHGHITSLAVKRS 471
L E Y + Y Y WPQL+++A D K G VG V+ KM E R G+I L V +
Sbjct: 43 LSEPYSIFTYRYFVYLWPQLTFLAFDPKDGKCVGTVVCKMGEHRGAFR-GYIAMLVVLKP 101
Query: 472 HRRLGLAQKLMNR 510
+R G+A +L+ R
Sbjct: 102 YRGRGIATELVTR 114
>04_01_0572 +
7404842-7405502,7405581-7406143,7406338-7406479,
7406605-7407436,7407546-7407729
Length = 793
Score = 32.3 bits (70), Expect = 0.47
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 361 VAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLMNRH 513
V D +G+ G+V +E + E+ G S+ KR+ + G A+KL RH
Sbjct: 41 VERDAEGNQQGHVERDVERNQEEEASGSQPSVGQKRARGQRGAAKKLEGRH 91
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 31.5 bits (68), Expect = 0.83
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 361 VAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLMNRH 513
V D +G+ G+V +E + E+ G S+ KR+ + G A+KL RH
Sbjct: 41 VERDAEGNQQGHVERDVEGNQEEEASGSQPSVGQKRARGQRGAAKKLEGRH 91
>10_08_0529 -
18565749-18565804,18566022-18566128,18566206-18566410,
18566500-18566812
Length = 226
Score = 31.5 bits (68), Expect = 0.83
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +3
Query: 549 VSLHVRKSNRAALNLYTNSLGFKILEIEPKYYADGEDAYSM 671
VSLHV + AA+ LY + GF++ YYA DAY M
Sbjct: 134 VSLHVDPARAAAVALYRKA-GFQVDATVVGYYAPRRDAYRM 173
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 361 VAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLMNRH 513
V D +G+ G+V +E + E+ G S+ KR+ + G A+KL RH
Sbjct: 140 VERDAEGNQQGHVERDVEGNQEEEAGGSQPSVGQKRARGQRGAAKKLEGRH 190
>01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739
Length = 179
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/83 (25%), Positives = 39/83 (46%)
Frame = +1
Query: 259 DLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRH 438
++M ++ N P Y KYY + ++ + S +A VG + ++E+
Sbjct: 33 NVMQLKKLNTALFPVRYNEKYY-HDTIASKEFSKLAY-YSDICVGAIACRLEKKEGGAVC 90
Query: 439 GHITSLAVKRSHRRLGLAQKLMN 507
+I +L V +R LG+ KL+N
Sbjct: 91 VYIMTLGVLAPYRSLGIGSKLLN 113
>03_04_0167 +
17936598-17936763,17938735-17938831,17938919-17939027,
17939125-17939163,17939655-17939768,17939886-17939947,
17940691-17940793,17942111-17942260,17942693-17942761,
17942840-17942896,17942966-17943226,17946154-17946222,
17946374-17946475,17947200-17947270,17947375-17947578,
17947848-17947941,17948350-17948646
Length = 687
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 394 YVLAKMEEDGEDNRHGHITSLAVKRSHRRLGLAQKLMNRHHLQ-WLNAFRQNMCH 555
Y++ K +D HG + ++ + +H R G+ + +MNR L+ W+ N+ H
Sbjct: 485 YLMLKGNSTPKDG-HGAVDNMKIIPAHDRQGMFKTIMNRTSLRHWIKKENTNIGH 538
>03_02_0081 -
5506194-5506197,5506310-5507170,5507299-5507456,
5507549-5507740
Length = 404
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 439 GHITSLAVKRSHRRLGLAQKLMNRHHLQWLNAFRQNMCHCM*EKATE 579
G+I L V SHRR+GLA +++ R W + +K+ E
Sbjct: 105 GYILGLRVAPSHRRMGLALRMVRRME-AWFERMGAEYAYMATDKSNE 150
>11_06_0203 + 21186905-21187986,21189022-21189398,21189735-21189850
Length = 524
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 723 SHCCQFYYQLQKHSDLASWNTHLL 652
+H C FYY+LQ++SD+ L+
Sbjct: 500 AHTCIFYYKLQRNSDIQETKVQLV 523
>08_02_0936 - 22771416-22771702,22772297-22772393,22772951-22773847
Length = 426
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +3
Query: 609 GFKILEIEPKYYADGEDAYSMMRDLSAFAVDNKTDSNATDNLEIKSESAI 758
GFK +E+ K+Y +D Y ++ D + + T SNA + E+ + ++
Sbjct: 218 GFKTIEMTEKFYCRAKDMYEILMDENRW--KGFTQSNARISREVGGQFSL 265
>04_01_0212 - 2654691-2656976
Length = 761
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 388 VGYVLAKMEED-GEDNRHGHITSLAVKRSHRRLGLAQK--LMNRHHLQW 525
VGY L +E ++ HG++T VK +HR + + QK L N +W
Sbjct: 563 VGYALTNDDEILPKEEYHGNLTEKKVKLAHRLVEMEQKPSLKNALRSKW 611
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,596,768
Number of Sequences: 37544
Number of extensions: 350641
Number of successful extensions: 800
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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