Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00526
         (816 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49056| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.8e-06)        36   0.052
SB_13364| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-21)        36   0.052
SB_20020| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 
SB_16857| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 
SB_46979| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)                        29   4.5  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              29   6.0  

>SB_49056| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.8e-06)
          Length = 118

 Score = 35.5 bits (78), Expect = 0.052
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = +1

Query: 418 DGEDNRHGHITSLAVKRSHRRLGLAQKLMN 507
           + ++  HGH+T+++V    RRLGLA KLM+
Sbjct: 8   EAQEQWHGHVTAVSVAPEFRRLGLAAKLMS 37


>SB_13364| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-21)
          Length = 259

 Score = 35.5 bits (78), Expect = 0.052
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = +1

Query: 295 LPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLAVKRSH 474
           L E Y +  Y Y   +WP L ++A   K   VG ++ K++        G+I  LAV++  
Sbjct: 132 LSEPYSIYTYRYFIHNWPNLCFLAM-YKDQCVGAIVCKLDVHKSMVHRGYIAMLAVEKDF 190

Query: 475 RRLGLAQKLMNR 510
           RR  +   L+ +
Sbjct: 191 RRHKIGTALVKK 202


>SB_20020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 95  WYIVWKCCLSKFRFVRELLGG 157
           W++VWK  L +F F+REL+ G
Sbjct: 17  WFVVWKMFLVRFSFIRELVYG 37


>SB_16857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 95  WYIVWKCCLSKFRFVRELLGG 157
           W++VWK  L +F F+REL+ G
Sbjct: 17  WFVVWKMFLVRFSFIRELVYG 37


>SB_46979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 298 PENYQMKYYFYHGLSWPQLSYV 363
           P NY   YY+Y+   +P LSY+
Sbjct: 41  PHNYAYYYYYYYYYYYPALSYI 62


>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
          Length = 594

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 20  SKSLVIVDILKI*FYELLQLIKF*SWYIVWKCCLSKFRFVR 142
           S SL I D + I  Y+ L L +F S      CCL+ F F+R
Sbjct: 403 SSSLPITDEVTISIYKHLDLSRFDSAMFWAACCLAYFGFLR 443


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 642  YADGEDAYSMMRDLSAFAVDNKTDSNATDNL 734
            Y+ G D  S  RD+  FA+D+K   +A D L
Sbjct: 935  YSRGRDQSSKTRDMDTFAMDHKDADDAIDFL 965


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,100,193
Number of Sequences: 59808
Number of extensions: 439665
Number of successful extensions: 1000
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)