Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00525
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 71 1e-13
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 45 1e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 42 1e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 41 2e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 39 0.001
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.002
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 36 0.005
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 36 0.007
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 36 0.009
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.015
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 34 0.020
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 34 0.026
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 33 0.061
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 32 0.081
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 32 0.11
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 31 0.19
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 31 0.19
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 31 0.25
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 29 0.57
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 29 0.57
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 29 0.57
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 29 0.99
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 2.3
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 26 7.0
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 26 7.0
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 25 9.3
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 25 9.3
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 71.3 bits (167), Expect = 1e-13
Identities = 34/73 (46%), Positives = 50/73 (68%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NLS+ E ++ DL + FG + ++YLAK+K TG KGFA+V + R A KA L+G+G
Sbjct: 208 NLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYG 267
Query: 688 YDHLILNVEWSKP 726
+++LIL E+SKP
Sbjct: 268 WNNLILRCEFSKP 280
Score = 54.4 bits (125), Expect = 2e-08
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Frame = +3
Query: 9 NGLKIVTEYKYDNDNKKVKIVRTYK---IEKRVVSKSIAKRKTWSKFGDSASDKPGPNPA 179
+G K + E++ D++ KKVK+ R + I +RV ++A+RK W KFG A G +
Sbjct: 29 DGTKTMIEFRIDDNGKKVKVTRVIRKTVITERV-QHAVAERKKWKKFGKEAGKNSGVDAR 87
Query: 180 TTNVAEDVFMQ----FITSKEESQ 239
TT+V E+V ++ + T+KEE Q
Sbjct: 88 TTSVGENVQLRLQLGWTTTKEEEQ 111
Score = 33.5 bits (73), Expect = 0.035
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 266 LKPPSSNVIFKCRTCQGDHLTLYCPFK 346
+K S+V+ +CR C+G+H T CP+K
Sbjct: 121 VKAKGSSVV-RCRACKGNHFTAQCPYK 146
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 523 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDH-L 699
A E ++DL FGPV L+L ++ TG+ KG+A + + A KA+ N D L
Sbjct: 21 ATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEKL 80
Query: 700 ILNVEWSKPPQ 732
++ + +PP+
Sbjct: 81 EVDFAFLEPPE 91
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NL+ E D+ L FG + ++++ +K T + KGFAY+ F DA +A L+
Sbjct: 329 NLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKP 388
Query: 688 YDHLILNV 711
+ +L+V
Sbjct: 389 FQGRLLHV 396
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 616 GFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 720
GF +V FK +A A A+ ++NG D L ++ S
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 583 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 678
+AK K G + FA++ FK DA KAI+ LN
Sbjct: 37 VAKTKE-GVSRRFAFIGFKNEEDADKAIRYLN 67
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/59 (37%), Positives = 29/59 (49%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 684
NLS A E D+ G G + + L + +G KGF YV F D+AK +NGH
Sbjct: 372 NLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS-DIDSAKKCVEMNGH 429
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 38.7 bits (86), Expect = 0.001
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NL + ++ DL G V + +A E TG KGF V F+ DAA +I+ LNG+
Sbjct: 286 NLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKLNGYR 344
Query: 688 Y 690
Y
Sbjct: 345 Y 345
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 37.9 bits (84), Expect = 0.002
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 490 NCHPYI-NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 666
+C Y+ N+ E + D+ K GPV L + +G KG+ + + A AA A+
Sbjct: 4 SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAV 63
Query: 667 QSLNGHGYDHLILNVEWSKPPQ 732
++LN + L V++ Q
Sbjct: 64 RNLNNYDAGTRRLRVDFPTADQ 85
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 708
E ++ + FG V + + +E T +GF ++ F +A AI +LN + +LN
Sbjct: 114 EDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLN 173
Query: 709 VEWSK 723
V+ +K
Sbjct: 174 VQKAK 178
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.9 bits (79), Expect = 0.007
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLA---KEKSTGHCKG--FAYVHFKFRADAAKAIQS 672
NL + +D+ +L + FG K ++ K KST FA++ F+ + A AI S
Sbjct: 26 NLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADNAIAS 85
Query: 673 LNGHGYDHLILNVEWS 720
LNG + L VE++
Sbjct: 86 LNGSSFQGNTLKVEYT 101
Score = 35.1 bits (77), Expect = 0.011
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 538 IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
+++L FG + LA ST KG+ +V F +A +AI +LNG
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNG 484
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 678
EA + +L GPV + + ++ T G+AYV+F D KA+ LN
Sbjct: 93 EAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELN 142
Score = 33.5 bits (73), Expect = 0.035
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NL E + DL FG + L L K+++ +GF +V++ A KA+ LN
Sbjct: 267 NLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKP-RGFGFVNYANHECAQKAVDELNDKE 325
Query: 688 Y 690
Y
Sbjct: 326 Y 326
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 538 IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
+ D FG + +A ++ G+ KG+ +VHF A AI+ +NG
Sbjct: 184 LHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNG 230
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 34.7 bits (76), Expect = 0.015
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +1
Query: 559 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 720
FG V ++ + K G GFA+V K R A +A+ SLNG D + V+W+
Sbjct: 131 FGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 34.3 bits (75), Expect = 0.020
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 511 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
L+N ++ D + GPV + ++K +G KG AYV F D+ +A +L+G
Sbjct: 247 LANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF-CHEDSVQAAIALSG 302
Score = 30.7 bits (66), Expect = 0.25
Identities = 12/51 (23%), Positives = 27/51 (52%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
+ D+ + + FG + ++L ++ KGF Y+ ++ A A++ +NG
Sbjct: 353 DEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQYRNPISARNALEKMNG 402
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 33.9 bits (74), Expect = 0.026
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +1
Query: 511 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
LS E+DI+ +GP+ ++ + + K TG G+A+V F+ D A ++ G
Sbjct: 107 LSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAG 163
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 32.7 bits (71), Expect = 0.061
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NL N E +I + ++ FGP+ ++ + E++ A+VHF A A KA+Q L
Sbjct: 212 NLPNGITEDEIREDLEPFGPIDQIKIVTERN------IAFVHFLNIAAAIKAVQELP--- 262
Query: 688 YDHLILNVEWSK 723
LN +WSK
Sbjct: 263 -----LNPKWSK 269
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 32.3 bits (70), Expect = 0.081
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NL +AD+ + G + ++ L + TG CKGF +V F KA++ GH
Sbjct: 234 NLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMEL--GHN 291
Query: 688 YDHLILNVEWSKPPQN 735
L + SK +N
Sbjct: 292 SWRLEYGEDRSKRMRN 307
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
++ ++DL FG + LA ++G KG+ +V F+ A +A +LNG
Sbjct: 397 KSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNG 447
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 31.1 bits (67), Expect = 0.19
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 562 GPVHKLYLAKEKSTGHCKGFAYVHF 636
G V+++ + +K TGH KGFAY+ F
Sbjct: 79 GSVNRVTILCDKFTGHPKGFAYIEF 103
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 31.1 bits (67), Expect = 0.19
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 708
E + ++ GPV L + TG KG+ + F A A++ LN +
Sbjct: 20 EQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIR 79
Query: 709 VEW-SKPPQNN 738
VE+ S P+ N
Sbjct: 80 VEFPSNDPRRN 90
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 30.7 bits (66), Expect = 0.25
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +1
Query: 511 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCK----GFAYVHFKFRADAAKAIQSLN 678
LS +++I L + G V K+ + + + G A+V F + D KAI++LN
Sbjct: 51 LSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLN 110
Query: 679 GHGYDHLILNVEWSKPPQ 732
G D + V+ ++P Q
Sbjct: 111 GKTLDDREIVVQKARPVQ 128
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 568 VHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVE 714
+ ++ L E+ G +GF +V F D ++AI+ +NG L L V+
Sbjct: 245 IRRIKLRGEQRRG--RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVK 291
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 29.5 bits (63), Expect = 0.57
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 511 LSNFAVEADIDDLVKGFGP---VHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 666
+ N A EA+ + L + FG + + + ++ T KGFAY+ FK KA+
Sbjct: 274 VGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 29.5 bits (63), Expect = 0.57
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 520 FAVEAD-IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDH 696
F++E D + D K G G +G A+ +F +A +Q+LNG+ +
Sbjct: 211 FSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQTLNGYEING 270
Query: 697 LILNVEWSK 723
L VEW +
Sbjct: 271 RRLRVEWKR 279
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.5 bits (63), Expect = 0.57
Identities = 17/75 (22%), Positives = 33/75 (44%)
Frame = +1
Query: 490 NCHPYINLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 669
NC NLS + E I L G + ++ + ++ T GF +V + DA +++
Sbjct: 32 NCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLK 91
Query: 670 SLNGHGYDHLILNVE 714
++ D I+ +
Sbjct: 92 YISRTSLDERIIRAD 106
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 28.7 bits (61), Expect = 0.99
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 604 GHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSK--PP 729
G +G A+ +F +A +Q LNG+ L VEW + PP
Sbjct: 270 GVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPP 313
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 678
NL ++ + +L GPV +++ +++ GF + F D A Q LN
Sbjct: 17 NLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILN 73
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 51 NKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGP 170
NK + + IEK V K AKRK + + G K P
Sbjct: 172 NKSAQKLNNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKP 211
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -3
Query: 660 FRSICPELEVHISKSFAMSSTFFLRKVQFMHRAKTF 553
+ S CPEL+ K A++++F R + + +++ F
Sbjct: 335 YLSYCPELKKSKHKGIALANSFSFRIAKVLKKSRIF 370
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/70 (22%), Positives = 33/70 (47%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 708
+A + + FG + + + K+ S ++ + F+ + A AI + I +
Sbjct: 181 DAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFETLSSAYSAINAEK----PSKIYD 236
Query: 709 VEWSKPPQNN 738
V+W KPP++N
Sbjct: 237 VQWLKPPKSN 246
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 544 DLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 639
D + FG V + ++ +TG +GF ++ FK
Sbjct: 181 DYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,328
Number of Sequences: 5004
Number of extensions: 56227
Number of successful extensions: 185
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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