Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00525
(782 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 89 4e-18
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 8e-05
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 39 0.005
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 38 0.007
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.012
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.028
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.065
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.085
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 34 0.15
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 32 0.46
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 31 0.80
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 31 1.1
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 31 1.1
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 31 1.1
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 31 1.1
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037) 31 1.4
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 31 1.4
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_35040| Best HMM Match : fn3 (HMM E-Value=0.016) 30 2.4
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 29 3.2
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06) 29 5.6
SB_11500| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.3) 29 5.6
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_10815| Best HMM Match : EGF (HMM E-Value=5.7e-09) 28 7.4
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 28 9.8
SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5) 28 9.8
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 89.0 bits (211), Expect = 4e-18
Identities = 38/72 (52%), Positives = 54/72 (75%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NLS E+D+ +L + GP+ +++LAK+K T KGFA+++F R DAA+AI+ L+G G
Sbjct: 187 NLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSGFG 246
Query: 688 YDHLILNVEWSK 723
YDHLILNVEW+K
Sbjct: 247 YDHLILNVEWAK 258
Score = 48.4 bits (110), Expect = 6e-06
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +3
Query: 18 KIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRK 125
KIVTEYK D++ K KI+ TY++E R V+K IAKRK
Sbjct: 88 KIVTEYKRDDEGKLQKIITTYRVETRRVAKEIAKRK 123
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 230 RESTPR*RELDGLKPPSSNVIFKCRTCQGDHLTLYCPFK 346
+ P E D LK S I +CR C+GDH T CP+K
Sbjct: 121 KRKNPDATEEDPLKKLSGQKIVQCRICKGDHWTTKCPYK 159
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 44.8 bits (101), Expect = 8e-05
Identities = 21/71 (29%), Positives = 40/71 (56%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
N+ A E DI +L +G + L++ ++ TG KG+A V ++ +A A+++LNG
Sbjct: 299 NIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAE 358
Query: 688 YDHLILNVEWS 720
++V+W+
Sbjct: 359 MLGQNISVDWA 369
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/66 (28%), Positives = 36/66 (54%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 708
+ DI + G V L ++++TG G+A+V++ DA KA++ +NG + L
Sbjct: 40 QEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLK 99
Query: 709 VEWSKP 726
V +++P
Sbjct: 100 VSFARP 105
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1
Query: 583 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQNN*K 744
+ + K +G GF +V + DA KAI LNG + +L V +S+P +N K
Sbjct: 78 IVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSRPGGDNTK 131
Score = 34.7 bits (76), Expect = 0.085
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 493 CHPYI-NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 669
C Y+ N+ A + I L G V+K+ + + CKGF +V + +A AIQ
Sbjct: 275 CTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQ 334
Query: 670 SLNGHGY 690
+LNG Y
Sbjct: 335 TLNGFMY 341
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/76 (26%), Positives = 38/76 (50%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
N+ A E + ++ GPV L ++ TG KG+ + +K + A A+++LNG+
Sbjct: 31 NIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYE 90
Query: 688 YDHLILNVEWSKPPQN 735
+ L V+ + +N
Sbjct: 91 LNGRALRVDSAASEKN 106
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +1
Query: 511 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
L N+ E + +L+ FG + L K+ +TG KG+A+ + AIQ LNG
Sbjct: 680 LPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGLNG 736
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 38.3 bits (85), Expect = 0.007
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +1
Query: 490 NCHPYI-NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 666
+C Y+ NL E D+ D+ +G + + L + G FA+V F+ DA A+
Sbjct: 260 DCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAG--PPFAFVEFEDPRDAEDAV 317
Query: 667 QSLNGHGYDHLILNVEWSK 723
+ +GH +D + VE+ +
Sbjct: 318 KGRDGHEFDGYRIRVEFPR 336
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 37.5 bits (83), Expect = 0.012
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 526 VEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 678
+E DI + + FG V L+KE TG KG+ ++ ++ + A AI S+N
Sbjct: 211 LEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMN 261
Score = 37.1 bits (82), Expect = 0.016
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 493 CHPYINLSNFAV-EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 669
C Y+ NF + E I FGP++K+ L+ + KGFA+V + A A++
Sbjct: 102 CRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALE 161
Query: 670 SLNG 681
+NG
Sbjct: 162 QMNG 165
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 36.3 bits (80), Expect = 0.028
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKST-GHCKGFAYVHFKFRADAAKA---IQSL 675
NL +A+ + GP+ + ++ K+K C+GF YV F DA KA I+S+
Sbjct: 26 NLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDALKAKDNIKSI 85
Query: 676 NG 681
G
Sbjct: 86 KG 87
Score = 32.3 bits (70), Expect = 0.46
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEK--STGHCKGFAYVHFKFRADAAKAIQSLNG 681
NL+ EA + + FG V + + ++K GF +V F DAAKA++ +N
Sbjct: 253 NLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALEEMNA 312
Query: 682 HGYDHLILNVEWSKP 726
+ V+W+ P
Sbjct: 313 KKILGRPVAVDWAVP 327
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 639
NLS + + +I +L K FG + + + T H KG A+V ++
Sbjct: 422 NLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKYR 465
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 35.1 bits (77), Expect = 0.065
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 502 YINLSNFAV-EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 678
Y+ +F + EA + + + FG V + L + T KG+ +V F+ A +A++ +N
Sbjct: 245 YVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMN 304
Query: 679 G 681
G
Sbjct: 305 G 305
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 34.7 bits (76), Expect = 0.085
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NL A E++I++L G V ++ L ++ G KG+ YV ++ + A+ A+ +L+
Sbjct: 177 NLPFDAKESEIEELFSKHGVVKQVRLVTNRA-GKPKGYGYVEYEQESSASTAVLTLDKTE 235
Query: 688 YDHLILNVEWSKPP 729
++V S PP
Sbjct: 236 VKGRTISVALSNPP 249
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 559 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 726
FG + + + + +T +GF +V F+F D A AI ++N + V +KP
Sbjct: 28 FGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLAKP 83
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 33.1 bits (72), Expect = 0.26
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 613 KGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQNN 738
K +A+VHF R A KAI+ +G D L + +KP N
Sbjct: 362 KDYAFVHFTERDHALKAIEETDGKEMDGLKIEASLAKPQPGN 403
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 32.3 bits (70), Expect = 0.46
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NLS E +++ G V + + ++ TG +GF +V F + + KAI +G
Sbjct: 11 NLSYSVDEQALEEKFHGCDVVD-VKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQD 69
Query: 688 YDHLILNVEWSKP 726
+D + V ++P
Sbjct: 70 FDGRPMKVNQAQP 82
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 31.5 bits (68), Expect = 0.80
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 708
+AD+ + FG V + +K T K F +V + A AIQ +NG L
Sbjct: 290 DADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLK 349
Query: 709 VEWSKPPQNN 738
V+ +P N
Sbjct: 350 VQLKRPKDAN 359
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKL-YLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
NL E + D FG + + + ++ TG+ KGFA+++F + AI+++NG
Sbjct: 106 NLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNG 164
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 592 EKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 726
++ TG +GF +V F + + KAI +G D + V +KP
Sbjct: 130 DRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKP 174
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 505 INLSNFAVEADIDD--LVKGFGPVHKLYLAK--EKSTGHCKGFAYVHFKFRADAAKAIQS 672
+NL ++ IDD L + F P + AK + G+ KGF +V F +A KA+
Sbjct: 212 VNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTE 271
Query: 673 LNG 681
+NG
Sbjct: 272 MNG 274
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +1
Query: 526 VEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 678
+E ++ L++ G + + L + +TG KGFA+ F + A +AI +LN
Sbjct: 165 LEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQTSAYQAITTLN 215
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 541 DDLVK---GFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
DDLV+ +G + +K T CKG+ +V F+ A KA+ +L G
Sbjct: 114 DDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVAALVNKG 165
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 583 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 690
L + +TG KGFAYV + A A + LNG Y
Sbjct: 233 LKRNYNTGESKGFAYVTYNSVGSAIYAKEKLNGFEY 268
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQS 672
+ D+ + FG + + + ++ T KG+ YV F + AA A+++
Sbjct: 66 DEDLRSKFESFGDIEYVQIVRDHKTRENKGYGYVKFHKSSTAAMALEN 113
>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
Length = 703
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = +2
Query: 428 PPSSAGRIPGRDQPPVSRED 487
P RIPG DQP VSRED
Sbjct: 630 PVKRVSRIPGNDQPRVSRED 649
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/65 (23%), Positives = 33/65 (50%)
Frame = +1
Query: 538 IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEW 717
+ ++ +G V + L +++ +GFAYV + + KA++ ++G D + V+
Sbjct: 1173 VQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQS 1232
Query: 718 SKPPQ 732
PP+
Sbjct: 1233 VLPPR 1237
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 708
EAD+ L G + + + ++ TG +GF +V F + KAI +G D +
Sbjct: 22 EADVLFLRNGSKFLLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMK 81
Query: 709 VEWSKP 726
V ++P
Sbjct: 82 VNKAQP 87
>SB_35040| Best HMM Match : fn3 (HMM E-Value=0.016)
Length = 442
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -3
Query: 645 PELEVHISKSFAMSSTFFLRKVQFMHRAKTFDKVINISFNCKI 517
P+L V ++ FA +S F ++++F+ F ++N +NC +
Sbjct: 179 PQLIVKVTSKFAETSCFGEKRLKFIRHNTLFVLLLNSDWNCTV 221
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 559 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
+G + + L ++K TG KGF ++ ++ + A+ + NG
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNG 42
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 559 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
+G + + L ++K TG KGF ++ ++ + A+ + NG
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNG 42
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 562 GPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG-HGYDHLILNVEWSKPPQNN 738
GP+ + + +K+TG + F +V F A + L+G YD I NV KP NN
Sbjct: 481 GPLENVRIPTDKNTGQQRSFGFVEFSSPVSVHYASELLDGIRLYDRAI-NV---KPQSNN 536
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 583 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQN 735
+ K+ + KGF +V F R DAAKAI ++ + W+ N
Sbjct: 544 VVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNN 594
>SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 816
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = +3
Query: 54 KKVKIVRTYKIEKRVVSKSIAK---RKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITS 224
K +++R Y+IEK +S+AK W KF + PNP T +D F
Sbjct: 559 KGYRVIRVYEIEKNPGLRSVAKMGLNCMWEKFVEQ------PNPQRTEYVDDPKAYFALL 612
Query: 225 KEESQRPDD 251
+S +D
Sbjct: 613 NNDSIEVND 621
>SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06)
Length = 159
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 269 KPPSSNVIFKCRTCQGDHLTLYCPFKHTQ 355
KPP S + KC C G H C F ++
Sbjct: 109 KPPQSATVSKCYRCDGKHDPRSCVFSQSK 137
>SB_11500| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.3)
Length = 425
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +3
Query: 30 EYKYDNDNKKVKIVRTYKIEKRVVSKSIAK---RKTWSKFGDSASDKPGPNPATTNVAED 200
+Y YD + + + KIEK+ +S+AK W KFG+ PNP T +D
Sbjct: 304 QYIYDYERHQGVCMDPSKIEKKPGLRSVAKMGLNCMWGKFGEQ------PNPQRTEYVDD 357
>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 269 KPPSSNVIFKCRTCQGDHLTLYCPFKHTQ 355
KPP S + KC C G H C F ++
Sbjct: 1239 KPPQSATVSKCYRCDGKHDPRSCVFSQSK 1267
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +1
Query: 559 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQNN 738
FG V + +K T K F +V + A AIQ +NG L V+ +P N
Sbjct: 285 FGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKRPKDAN 344
>SB_10815| Best HMM Match : EGF (HMM E-Value=5.7e-09)
Length = 415
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 57 KVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNV 191
K I+R Y+ ++ + KR W +FG + K GP +N+
Sbjct: 179 KGPIIRQYRSSLALIGYAGRKRPHWMRFGQNPPSK-GPTTVNSNI 222
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 517 NFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCK--GFAYVHFKFRADAAKAIQSLNG 681
+F V AD++ + G H + + + + GF +V F A+A KA + LNG
Sbjct: 90 SFGVIADVEIIYNERGSKHAVRFPTRPNPLNLRIEGFGFVTFNTAAEANKAREKLNG 146
>SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5)
Length = 297
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +3
Query: 87 EKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDD 251
E+ + +KS + K+ S GDS S P P+ + + ++V Q ++ ++ D
Sbjct: 74 EEAIGAKSENEEKSESSSGDSESPPPKPHVSAKELIDEVVKQEMSKHKKKNNDGD 128
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,858,552
Number of Sequences: 59808
Number of extensions: 436691
Number of successful extensions: 1327
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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