Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00525
(782 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 76 3e-14
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 70 2e-12
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 50 1e-06
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 48 5e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 47 1e-05
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 47 1e-05
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 44 1e-04
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 44 2e-04
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 44 2e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 42 3e-04
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 42 3e-04
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 42 5e-04
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 42 5e-04
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 40 0.002
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 40 0.002
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 39 0.004
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 39 0.004
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 39 0.004
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 39 0.004
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 39 0.004
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 38 0.006
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 38 0.006
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 38 0.008
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 38 0.010
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 37 0.013
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 37 0.017
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 37 0.017
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 37 0.017
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 36 0.023
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 36 0.040
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 36 0.040
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 36 0.040
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 36 0.040
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.040
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.040
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.040
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 35 0.053
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 35 0.053
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 35 0.053
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 35 0.053
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 35 0.070
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 35 0.070
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 35 0.070
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 34 0.092
At2g47310.1 68415.m05906 flowering time control protein-related ... 34 0.092
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 34 0.12
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 34 0.12
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 34 0.12
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 34 0.12
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 34 0.12
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 34 0.12
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 34 0.12
At5g51300.2 68418.m06360 splicing factor-related contains simila... 33 0.16
At5g51300.1 68418.m06359 splicing factor-related contains simila... 33 0.16
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 33 0.16
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 33 0.16
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 33 0.16
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 33 0.16
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 33 0.16
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 33 0.21
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 33 0.21
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 33 0.21
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 33 0.21
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 33 0.21
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 33 0.21
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 33 0.28
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 33 0.28
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 33 0.28
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 33 0.28
At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR... 33 0.28
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 33 0.28
At1g71410.1 68414.m08247 protein kinase family protein contains ... 32 0.37
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 32 0.49
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 32 0.49
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 32 0.49
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 32 0.49
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 32 0.49
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 31 0.65
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 31 0.65
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 31 0.65
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 31 0.86
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 31 0.86
At1g22870.1 68414.m02855 protein kinase family protein contains ... 31 0.86
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 31 0.86
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 31 1.1
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 30 1.5
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 30 1.5
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 30 2.0
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 30 2.0
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 30 2.0
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 30 2.0
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 30 2.0
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 30 2.0
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 29 2.6
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 29 2.6
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 29 2.6
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 29 3.5
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 29 3.5
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 3.5
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 3.5
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 29 4.6
At5g37040.1 68418.m04442 F-box family protein contains Pfam prof... 29 4.6
At4g11460.1 68417.m01844 protein kinase family protein contains ... 29 4.6
At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putativ... 29 4.6
At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing ... 29 4.6
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 29 4.6
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 28 6.1
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 28 6.1
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 28 6.1
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 28 6.1
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 28 6.1
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 28 6.1
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NLS E D+ +L FG V ++Y+A ++ TG +GF +V+F R DA +AI LNG+G
Sbjct: 219 NLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYG 278
Query: 688 YDHLILNVEWSKP 726
YD+LIL VEW+ P
Sbjct: 279 YDNLILRVEWATP 291
Score = 52.0 bits (119), Expect = 4e-07
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Frame = +3
Query: 6 ENGLKIVTEYKYDNDNKKVKI---VRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNP 176
ENGLK EYK++++ KVKI R K+ ++K +R+ W KFGD+A+++ G +
Sbjct: 37 ENGLKTTIEYKFNDEENKVKITTRTRVRKLASARLNKRAMERRNWPKFGDAANEEAGSH- 95
Query: 177 ATTNVAEDVFMQFI----TSKEESQRPDDGSLMVLSHHPAMLSLSVVHVK 314
T E++ ++ T +ES+ DG + ++ + H K
Sbjct: 96 LTMVSTEEILLERPRAPGTKADESKATGDGLSQLGKGGAVLMVCRICHKK 145
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/73 (45%), Positives = 46/73 (63%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NLS D+ +L + FG V + ++A ++ T +GF +V F R DA +AI LNG+G
Sbjct: 180 NLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYG 239
Query: 688 YDHLILNVEWSKP 726
YD+LIL VEWS P
Sbjct: 240 YDNLILRVEWSTP 252
Score = 64.1 bits (149), Expect = 1e-10
Identities = 27/71 (38%), Positives = 49/71 (69%)
Frame = +3
Query: 6 ENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATT 185
+NG+K V EYK++ ++KKVKI T +++KR ++K +R++W+KFGD+A ++ + T
Sbjct: 6 QNGVKKVIEYKFNEEDKKVKITTTTRVQKRALTKQAVERRSWNKFGDAAHEE-SSSYLTM 64
Query: 186 NVAEDVFMQFI 218
ED+ ++ I
Sbjct: 65 RSTEDIILERI 75
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/73 (36%), Positives = 39/73 (53%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NL A +DI + G V +++ K TG KGFA+V F + DAA AI+ NGH
Sbjct: 337 NLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHM 396
Query: 688 YDHLILNVEWSKP 726
+ + V+W+ P
Sbjct: 397 FGKRPIAVDWAVP 409
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 532 ADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
A +++ GPV + +L K + +GFA+V F + D +AI+ NG
Sbjct: 34 AQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNG 83
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 505 INLSNFAVEADIDDLVKGFGPVHKLYLA--KEKSTGHCKGFAYVHFKFRADAAKAIQSLN 678
+ + N A DDL FG K+ A + G KGF +V+F+ DAA+A++SLN
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 679 GHGYD 693
GH +D
Sbjct: 91 GHKFD 95
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/73 (27%), Positives = 44/73 (60%)
Frame = +1
Query: 505 INLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 684
+N++ D+ L +G V +++ +++ TG +GFA+V +K++ +A KA++ L+G
Sbjct: 21 LNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGR 80
Query: 685 GYDHLILNVEWSK 723
D + V+++K
Sbjct: 81 VVDGREITVQFAK 93
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/73 (27%), Positives = 44/73 (60%)
Frame = +1
Query: 505 INLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 684
+N++ D+ L +G V +++ +++ TG +GFA+V +K++ +A KA++ L+G
Sbjct: 21 LNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGR 80
Query: 685 GYDHLILNVEWSK 723
D + V+++K
Sbjct: 81 VVDGREITVQFAK 93
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 678
NL A D+ D + FGP+ +YL + TG +GF +V +++ DAA+A++ +N
Sbjct: 53 NLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMN 109
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/75 (30%), Positives = 40/75 (53%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
+LS EA + ++ FG V + +A +++ +G YV FK RADA KA ++G
Sbjct: 104 SLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQ 163
Query: 688 YDHLILNVEWSKPPQ 732
D ++ ++ PP+
Sbjct: 164 IDGKVVKATFTLPPR 178
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/75 (30%), Positives = 40/75 (53%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
+LS EA + ++ FG V + +A +++ +G YV FK RADA KA ++G
Sbjct: 104 SLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQ 163
Query: 688 YDHLILNVEWSKPPQ 732
D ++ ++ PP+
Sbjct: 164 IDGKVVKATFTLPPR 178
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 684
NL + + D+ + FGPV +YL ++ TG +GF ++ F ADAA+A ++G+
Sbjct: 43 NLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGY 101
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 684
NL + + D+ + FGPV +YL ++ TG +GF +V F ADAA A ++G+
Sbjct: 42 NLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGY 100
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +1
Query: 505 INLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 684
I+++N ++L K F + ++ K +T KG+ YV FK R A +A+Q + G
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKIPAT---KGYGYVQFKTRPSAEEAVQRMQGQ 295
Query: 685 GYDHLILNVEWSKPP 729
+ + WSK P
Sbjct: 296 VIGQQAVRISWSKNP 310
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 678
E D+ DL + G + ++ L K++ +G KG+A+V FK + A KAI+ L+
Sbjct: 129 EEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELH 178
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/64 (28%), Positives = 36/64 (56%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 708
E DI + FG + L L ++ +G+ KG+A + ++ + +A AI ++NG ++
Sbjct: 108 EEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVS 167
Query: 709 VEWS 720
V+W+
Sbjct: 168 VDWA 171
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +1
Query: 523 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 678
A E D+ G V ++ + +EK +G KG+A+V F+ + AA+AI +LN
Sbjct: 103 ATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLN 154
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ-SLNG 681
E + + + FGPV + L + TG CKGF ++ F + + +KA Q +LNG
Sbjct: 278 ELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF-VQLEHSKAAQIALNG 328
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NLS A + L + G V + + +K TG +GF +V A+ A Q NG+
Sbjct: 105 NLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYE 164
Query: 688 YDHLILNVEWSKPP 729
++ L V PP
Sbjct: 165 FEGRPLRVNAGPPP 178
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NLS + +++L G V + + ++ +G KGF +V + KAI SLNG
Sbjct: 255 NLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGAD 314
Query: 688 YDHLILNVE--WSKPPQ 732
D + V ++PP+
Sbjct: 315 LDGRQIRVSEAEARPPR 331
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NLS A + L + G V + + +K TG +GF +V A+ A Q NG+
Sbjct: 105 NLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYE 164
Query: 688 YDHLILNVEWSKPP 729
++ L V PP
Sbjct: 165 FEGRPLRVNAGPPP 178
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NLS + +++L G V + + ++ +G KGF +V + KAI SLNG
Sbjct: 263 NLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGAD 322
Query: 688 YDHLILNVE--WSKPPQ 732
D + V ++PP+
Sbjct: 323 LDGRQIRVSEAEARPPR 339
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
E + D FG V ++ +A +K +G +GF +V F DA A +++G G
Sbjct: 54 EQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKG 106
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +1
Query: 511 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 690
LS E + D + FG + + + +K KGFA++ ++ +A KAIQ ++G
Sbjct: 84 LSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFL 143
Query: 691 DHLILNVEWSK 723
D ++ VE +K
Sbjct: 144 DGRVIFVEEAK 154
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +1
Query: 511 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
L + E I +L++ FGP+ L K++ TG+ KG+A+ ++ + A +LNG
Sbjct: 382 LPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNG 438
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NLS + +++ + FG + ++ G KGF +V+F+ DAA+A+ +LNG
Sbjct: 230 NLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDALNGKT 288
Query: 688 YD 693
+D
Sbjct: 289 FD 290
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
NL + + FGP+ +A + S G KG+ +V + A AI LNG
Sbjct: 139 NLDKSIDHKALHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNG 195
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +1
Query: 559 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 690
FGPV +Y+ ++ +G +GFA+V F DA +A +S+N +
Sbjct: 70 FGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSF 113
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 526 VEAD-IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLI 702
+++D + D + FG + + K++STG +GF YV F DA A++ H + I
Sbjct: 14 IDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK--GEHFLGNRI 71
Query: 703 LNVEWSKPPQ 732
L V+ + P +
Sbjct: 72 LEVKVATPKE 81
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Frame = +1
Query: 502 YINLSNFAVEADI-DDLVKG----FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 666
Y NL ++AD+ +DL++ FG + L +AK+++ C+G+A+V+F DA +A
Sbjct: 200 YTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAA 258
Query: 667 QSLNG 681
+++NG
Sbjct: 259 ETVNG 263
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 36.7 bits (81), Expect = 0.017
Identities = 15/56 (26%), Positives = 35/56 (62%)
Frame = +1
Query: 559 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 726
FG + ++ L K+++ KG+A++ F + DA AI++++ Y+ ++ ++ +KP
Sbjct: 63 FGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKP 118
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/66 (28%), Positives = 39/66 (59%)
Frame = +1
Query: 511 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 690
LS + E D+ ++ +GP+H + + +E+++G +GFA++ F DAA+ + H
Sbjct: 305 LSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFP-TVDAARTMMDRIEH-- 361
Query: 691 DHLILN 708
D ++L+
Sbjct: 362 DGIVLD 367
Score = 36.7 bits (81), Expect = 0.017
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +1
Query: 565 PVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDH--LILNVEWSK 723
P+ L L ++K T +GFA+VHF DA KA+++ N + IL V ++K
Sbjct: 483 PIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAK 537
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 36.7 bits (81), Expect = 0.017
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = +1
Query: 511 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 690
+S + E + +G V K+ + +K KGFAYV F + +A KA+ LN
Sbjct: 28 ISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLV 87
Query: 691 DHLILNVEWSKPPQNN 738
D ++ ++ +K ++N
Sbjct: 88 DGRVVILDTTKAAKHN 103
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 678
E+ + DL PVH L + ++ T G+AYV+F DA++A++SLN
Sbjct: 58 ESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLN 106
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 35.5 bits (78), Expect = 0.040
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +1
Query: 583 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSK 723
L K++ T KGF ++ F+ DA KA+++LNG + ++ VE +K
Sbjct: 97 LIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 143
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 35.5 bits (78), Expect = 0.040
Identities = 23/69 (33%), Positives = 35/69 (50%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NL E +++DL +GPV ++ L K G+A+V F+ DA AI +G+
Sbjct: 13 NLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGRDGYD 69
Query: 688 YDHLILNVE 714
+D L VE
Sbjct: 70 FDGHHLRVE 78
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 35.5 bits (78), Expect = 0.040
Identities = 23/69 (33%), Positives = 35/69 (50%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NL E +++DL +GPV ++ L K G+A+V F+ DA AI +G+
Sbjct: 13 NLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGRDGYD 69
Query: 688 YDHLILNVE 714
+D L VE
Sbjct: 70 FDGHHLRVE 78
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 35.5 bits (78), Expect = 0.040
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +1
Query: 502 YINLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
+IN+S E D+ + + FG V + + +++ TG CKGF +V F DA A+ +LNG
Sbjct: 293 HINMS----EDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNAL-NLNG 346
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.5 bits (78), Expect = 0.040
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NL E +++DL +GPV ++ L K G+A+V F DA AI +G+
Sbjct: 13 NLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDGYD 69
Query: 688 YDHLILNVE 714
+D L VE
Sbjct: 70 FDGHRLRVE 78
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 35.5 bits (78), Expect = 0.040
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NL E +++DL +GPV ++ L K G+A+V F DA AI +G+
Sbjct: 13 NLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDGYD 69
Query: 688 YDHLILNVE 714
+D L VE
Sbjct: 70 FDGHRLRVE 78
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.5 bits (78), Expect = 0.040
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NL E +++DL +GPV ++ L K G+A+V F DA AI +G+
Sbjct: 13 NLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDGYD 69
Query: 688 YDHLILNVE 714
+D L VE
Sbjct: 70 FDGHRLRVE 78
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 35.1 bits (77), Expect = 0.053
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
E D+ + +G + + L ++K TG KGFA++ ++ + A+ +LNG
Sbjct: 49 EGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNG 99
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 35.1 bits (77), Expect = 0.053
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 553 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 669
+G+G + + + +K+TG KGF +V FK R A +A++
Sbjct: 125 EGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 35.1 bits (77), Expect = 0.053
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 553 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 669
+G+G + + + +K+TG KGF +V FK R A +A++
Sbjct: 125 EGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 35.1 bits (77), Expect = 0.053
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
+LS +A + D F + ++ TG +GF +V F+ + DA AI +NG
Sbjct: 154 DLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKW 213
Query: 688 YDHLILNVEWS 720
+ W+
Sbjct: 214 VSSRQIRCNWA 224
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLA-KEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 684
N+ E + ++ GP+ L K+KS+ + +VH+ R A+ AI +LNG
Sbjct: 69 NIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-----YGFVHYFDRRCASMAIMTLNGR 123
Query: 685 GYDHLILNVEWS 720
+ V W+
Sbjct: 124 HIFGQPMKVNWA 135
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 34.7 bits (76), Expect = 0.070
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 511 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG--H 684
+ NF E DL + F ++ KS G+A+V+F+ DA AI+ L+
Sbjct: 6 VGNFEYETRQSDLERLFDKYGRVDRVDMKS-----GYAFVYFEDERDAEDAIRKLDNFPF 60
Query: 685 GYDHLILNVEWSK 723
GY+ L+VEW+K
Sbjct: 61 GYEKRRLSVEWAK 73
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 34.7 bits (76), Expect = 0.070
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +1
Query: 511 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 690
LS + D FG + + ++ +G KGF +V + DA KA +N
Sbjct: 41 LSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFL 100
Query: 691 DHLILNVEWSKP 726
D ++ V+ ++P
Sbjct: 101 DGWVIFVDPARP 112
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 34.7 bits (76), Expect = 0.070
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +1
Query: 532 ADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNV 711
A + L + G V + + +K TG +GF +V ++ A Q NG+ D L V
Sbjct: 105 AQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
Query: 712 EWSKPP 729
PP
Sbjct: 165 NAGPPP 170
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NLS + ++ L G V + + ++ +G KGF +V + + AI+SL+G
Sbjct: 210 NLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGAD 269
Query: 688 YDHLILNVE--WSKPPQ 732
D + V ++PP+
Sbjct: 270 LDGRQIRVSEAEARPPR 286
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 34.3 bits (75), Expect = 0.092
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +1
Query: 559 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQN 735
FG V K ++ + +TG G AY+ F R +AA+ SL+G + IL + QN
Sbjct: 539 FGEVLKAFIVTDPATGQPSGSAYIEFT-RKEAAENALSLDGTSFMSRILKIVKGSNGQN 596
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 34.3 bits (75), Expect = 0.092
Identities = 15/57 (26%), Positives = 33/57 (57%)
Frame = +1
Query: 511 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
L+ + +++++ +G + +Y+A + C+G+A+V F + A AI++LNG
Sbjct: 214 LNKQTTKMEVNEVFSRYGIIEDIYMALDDMK-ICRGYAFVQFSCKEMALAAIKALNG 269
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 511 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
L + E+ + +L++ FG + L K++ TG+ KG+A+ ++ + A +LNG
Sbjct: 366 LPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 422
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 511 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
L + E+ + +L++ FG + L K++ TG+ KG+A+ ++ + A +LNG
Sbjct: 366 LPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 422
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 511 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
L + E+ + +L++ FG + L K++ TG+ KG+A+ ++ + A +LNG
Sbjct: 366 LPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 422
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL-NGH 684
N++ A + ++ L FG + + L K K+ G G+A+V F + +A A ++L + H
Sbjct: 675 NIAFEATKRELRQLFSPFGQIKSMRLPK-KNIGQYAGYAFVEFVTKQEALNAKKALASTH 733
Query: 685 GYD-HLILNVEWS 720
Y HL+L EW+
Sbjct: 734 FYGRHLVL--EWA 744
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAK---EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
E + D L K F +AK +K TG KG+ +V F AD A A++ +NG
Sbjct: 147 EVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNG 200
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
NLS + ++ +G + + ++ G + F +V+F+ DAA+A+++LNG
Sbjct: 231 NLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEALNGKK 289
Query: 688 YD 693
+D
Sbjct: 290 FD 291
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/69 (24%), Positives = 35/69 (50%)
Frame = +1
Query: 520 FAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHL 699
+ +A+I+ ++ +G V ++ E+ +G KG+ V F A AA + +NG ++
Sbjct: 212 WTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGMNGFIFNGK 271
Query: 700 ILNVEWSKP 726
V ++ P
Sbjct: 272 ACVVAFASP 280
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 544 DLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD--HLILNVEW 717
+L FG + + K++ TG KG+ +V + A A+Q++NG+ ++ L + +
Sbjct: 498 NLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAG 557
Query: 718 SKPP 729
PP
Sbjct: 558 KSPP 561
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 544 DLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD--HLILNVEW 717
+L FG + + K++ TG KG+ +V + A A+Q++NG+ ++ L + +
Sbjct: 498 NLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAG 557
Query: 718 SKPP 729
PP
Sbjct: 558 KSPP 561
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +1
Query: 514 SNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 693
S E + D+ G + + L K KS G + FAY+ F+ +A AI +N D
Sbjct: 11 SKHVTEERLRDVFSRKGEIADVKL-KRKSDGKSRQFAYIGFRTEQEAQDAITYVNKCFID 69
Query: 694 HLILNVEWSKPP 729
++VE + PP
Sbjct: 70 TYRISVEVADPP 81
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 708
+ D+ FG V + ++ +G +GF +V FK AI+ +NG D ++
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 709 V 711
V
Sbjct: 79 V 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 708
+ D+ FG V + ++ +G +GF +V FK AI+ +NG D ++
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 709 V 711
V
Sbjct: 79 V 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 708
+ D+ FG V + ++ +G +GF +V FK AI+ +NG D ++
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 709 V 711
V
Sbjct: 79 V 79
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 693
E I+ FG V + ++ TG KGF +V FK AI +NG D
Sbjct: 57 EQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELD 111
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 511 LSNFAVEADIDDLVKGF---GPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
+ A D D L + F G V + ++ TG +GF +V F A+ AIQ+L+G
Sbjct: 44 IGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDG 103
Query: 682 HGYDHLILNVEWS 720
++ V ++
Sbjct: 104 RDLHGRVVKVNYA 116
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/69 (24%), Positives = 36/69 (52%)
Frame = +1
Query: 520 FAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHL 699
+ +A+++ + +G V ++ EK++G KG+ V F A+ +LNG+ ++
Sbjct: 244 WTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNGYPFNGR 303
Query: 700 ILNVEWSKP 726
VE++ P
Sbjct: 304 PCVVEYASP 312
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD--HLI 702
E+ I + +GP+ +++L ++ T KG+A++ + D A + +G D ++
Sbjct: 151 ESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVL 210
Query: 703 LNVEWSKPPQN 735
++VE + N
Sbjct: 211 VDVERGRTVPN 221
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 559 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 678
FG + + + +K+TG KG+ +V FK A +A Q++N
Sbjct: 45 FGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMN 84
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +1
Query: 484 RRNCHPYINLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA 663
+R C N+ A E + ++ GPV L ++ TG KG+ + +K A A
Sbjct: 7 QRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSA 66
Query: 664 IQSLNGHGYDHLILNVEWSK 723
++L + + L V++++
Sbjct: 67 RRNLQSYEINGRQLRVDFAE 86
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 559 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 669
+G V + +AKEK TG +GF +V F D KA++
Sbjct: 29 YGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +1
Query: 511 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 690
LS E + + G V + + ++ + KGF +V F +A KA+ NG
Sbjct: 41 LSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQL 100
Query: 691 DHLILNVEWSKPPQN 735
+ + V+++K Q+
Sbjct: 101 NGRTIFVDYAKAKQS 115
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
+ D+ FG V + ++ +G +GF +V FK AI+ +NG G
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGSG 71
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 32.7 bits (71), Expect = 0.28
Identities = 19/79 (24%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Frame = +1
Query: 511 LSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG--- 681
LS + E + +GFG + ++ + +K + KG+A++ + A A++ +NG
Sbjct: 289 LSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKII 348
Query: 682 HGYDHLILNVEWSKPPQNN 738
+G+ ++++V +KP + N
Sbjct: 349 NGW-MIVVDVAKTKPFRQN 366
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 592 EKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 720
++ TG +GF +V F+ + DA AI +NG + W+
Sbjct: 178 DQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 220
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLA-KEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 684
N+ E + ++ GPV L K+KS+ + +VH+ R AA AI SLNG
Sbjct: 65 NIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-----YGFVHYFDRRSAALAILSLNGR 119
Query: 685 GYDHLILNVEWS 720
+ V W+
Sbjct: 120 HLFGQPIKVNWA 131
>At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1007
Score = 32.7 bits (71), Expect = 0.28
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 502 YINLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
+IN+SN +E +D +KG +H L L+ K +AD +++SLNG
Sbjct: 764 HINISNSGIEWITEDCIKGLHNLHDLCLSGCKRLVSLPELPRSLKILQADDCDSLESLNG 823
Query: 682 H 684
H
Sbjct: 824 H 824
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 592 EKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 720
++ TG +GF +V F+ + DA AI +NG + W+
Sbjct: 186 DQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 228
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLA-KEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 684
N+ E + ++ GP+ L K+KS+ + +VH+ R A+ AI +LNG
Sbjct: 69 NIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-----YGFVHYFDRRCASMAIMTLNGR 123
Query: 685 GYDHLILNVEWS 720
+ V W+
Sbjct: 124 HIFGQPMKVNWA 135
>At1g71410.1 68414.m08247 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 909
Score = 32.3 bits (70), Expect = 0.37
Identities = 20/60 (33%), Positives = 34/60 (56%)
Frame = +2
Query: 488 VTAIRISTLAILQLKLILMTLSKVLALCINCTLRRKKVLDIAKDLLMCTSSSGQMLRKQF 667
V A+R++ A+L L ++ TL K A+ I T++R +D + LMCT + + KQ+
Sbjct: 517 VAAVRVN--ALLCLAELVQTLDKPAAIEILETIQRCTAVDRSAPTLMCTLAVANAILKQY 574
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/63 (23%), Positives = 33/63 (52%)
Frame = +1
Query: 544 DLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSK 723
D + +G + + + +K +G +GF ++ F + +AI ++NG D + V+ ++
Sbjct: 25 DAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQ 84
Query: 724 PPQ 732
P Q
Sbjct: 85 PHQ 87
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 687
+LS E D+ D PV ++L + TG +AY++F A+ A+ LN
Sbjct: 27 DLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNHSD 86
Query: 688 YDHLILNVEWSK 723
+ + WS+
Sbjct: 87 LKGKAMRIMWSQ 98
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 31.9 bits (69), Expect = 0.49
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +1
Query: 502 YINLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
++ + NF + DL + F ++ KS G+A+V+F+ DA AI+ +
Sbjct: 3 HVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS-----GYAFVYFEDERDAEDAIRRTDN 57
Query: 682 --HGYDHLILNVEWSK 723
GY L+VEW+K
Sbjct: 58 TTFGYGRRKLSVEWAK 73
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 517 NFAVEADIDDLVKGFGPVHKLYLAK---EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
N E + +L F P K+ AK +K+TG K F ++ + +A A AI ++NG
Sbjct: 345 NIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNG 402
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 517 NFAVEADIDDLVKGFGPVHKLYLAK---EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
N E + +L F P K+ AK +K+TG K F ++ + +A A AI ++NG
Sbjct: 336 NIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNG 393
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 559 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 693
+G V + ++ TG +GF +V FK AI+ +NG D
Sbjct: 31 YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLD 75
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 559 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 693
+G V + ++ TG +GF +V FK AI+ +NG D
Sbjct: 31 YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLD 75
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 31.5 bits (68), Expect = 0.65
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 669
NLS AD+++ K G V + + + G +GF +V F +A KA++
Sbjct: 303 NLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 31.1 bits (67), Expect = 0.86
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
++ + FG V + + ++ TG +GF +V F A AI+ ++G
Sbjct: 48 DSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDG 98
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 31.1 bits (67), Expect = 0.86
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
++ + FG V + + ++ TG +GF +V F A AI+ ++G
Sbjct: 48 DSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDG 98
>At1g22870.1 68414.m02855 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 913
Score = 31.1 bits (67), Expect = 0.86
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +2
Query: 488 VTAIRISTLAILQLKLILMTLSKVLALCINCTLRRKKVLDIAKDLLMCTSSSGQMLRKQF 667
V A+R++ A+L L ++ TL K+ I T++R +D + LMCT + + KQ+
Sbjct: 517 VAAVRVN--ALLCLAELVQTLDKLAVTEILQTIQRCTAVDRSAPTLMCTLAIANAILKQY 574
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 31.1 bits (67), Expect = 0.86
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLA-KEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 684
N+ E + ++ G GPV L KEKS+ + +VH+ R A AI SLNG
Sbjct: 60 NIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS-----YGFVHYFDRRSAGLAILSLNGR 114
Query: 685 GYDHLILNVEWS 720
+ V W+
Sbjct: 115 HLFGQPIKVNWA 126
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 592 EKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 720
++ TG +GF +V F+ + DA AI + G + W+
Sbjct: 173 DQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +1
Query: 505 INLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 684
+ + N A E DL + F + + +E KGF +V + +AA AIQ N H
Sbjct: 262 VYVGNLAPEVSQVDLHRHFHSLGAGVI-EEVRVQRDKGFGFVRYSTHVEAALAIQMGNTH 320
Query: 685 GY 690
Y
Sbjct: 321 SY 322
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/58 (22%), Positives = 29/58 (50%)
Frame = +1
Query: 508 NLSNFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
NLS + + + G+G V + +++ T +GF +V + ++A A+ ++G
Sbjct: 9 NLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDG 66
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 616 GFAYVHFKFRADAAKAIQSLNG--HGYDHLILNVEWSK 723
G+A+V+F+ DA AI+ + GY L+VEW+K
Sbjct: 10 GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAK 47
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +1
Query: 496 HPYINLSNFAVEADIDDLVK---GFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAI 666
H + + A E D++ + FG + + + +K+TG KG+ +V F+ A +A+
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV 75
Query: 667 QSLN 678
N
Sbjct: 76 ADPN 79
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +1
Query: 541 DDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 720
DDL FG +L K + C +V + RA A +A+ LNG + + W
Sbjct: 292 DDLKSVFGQFGELVHVKIPAGKRC---GFVQYANRACAEQALSVLNGTQLGGQSIRLSWG 348
Query: 721 KPPQN 735
+ P N
Sbjct: 349 RSPSN 353
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +1
Query: 583 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
+ +++TG KG+ +V F ++ +A+ +NG
Sbjct: 205 VVNDRTTGRSKGYGFVRFADESEQIRAMTEMNG 237
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 553 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQ 732
+ FG V + +K+TG K F +V + +A A AI +NG L V+ +
Sbjct: 370 QSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKRDSN 429
Query: 733 N 735
N
Sbjct: 430 N 430
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +1
Query: 490 NCHPYINLSNFAVEADIDDLVK---GFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 660
N I +SN + + D L++ FG + + L +K+TG KGFA ++ A K
Sbjct: 224 NVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKK 283
Query: 661 AIQ 669
A++
Sbjct: 284 ALE 286
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 613 KGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQN 735
KG +V F R +A +A++ LNG + + W + P N
Sbjct: 341 KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPAN 381
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 613 KGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPPQN 735
KG +V F R +A +A++ LNG + + W + P N
Sbjct: 339 KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPAN 379
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 607 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEW 717
H KG YVH++ A A QS+NG + +N E+
Sbjct: 333 HLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEF 369
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 613 KGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 729
KG +V F R A AI+SLNG + + W + P
Sbjct: 356 KGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP 394
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 559 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 678
FG + + + +K+TG KG+ +V F+ A +A+ N
Sbjct: 40 FGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 559 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 678
FG + + + +K+TG KG+ +V F+ A +A+ N
Sbjct: 40 FGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 490 NCHPYINLSNFAVEAD-IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 636
+C +I ++ D + D FG V + + K+++TG +GF +V F
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 490 NCHPYINLSNFAVEAD-IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 636
+C +I ++ D + D FG V + + K+++TG +GF +V F
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA-IQSLNGHGYDHLIL 705
E + + FG V + + K+++TG +GF +V F AD A A I H D ++
Sbjct: 19 EERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF---ADPAVAEIVITEKHNIDGRLV 75
Query: 706 NVEWSKP 726
+ + P
Sbjct: 76 EAKKAVP 82
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 529 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA-IQSLNGHGYDHLIL 705
E + + FG V + + K+++TG +GF +V F AD A A I H D ++
Sbjct: 19 EERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF---ADPAVAEIVITEKHNIDGRLV 75
Query: 706 NVEWSKP 726
+ + P
Sbjct: 76 EAKKAVP 82
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 559 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
+G V + +++TG KG+ +V F + +A+ +NG
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNG 218
>At5g37040.1 68418.m04442 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 242
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/83 (18%), Positives = 37/83 (44%)
Frame = -3
Query: 717 PFHVQNQMIIPMTIK*LNCFRSICPELEVHISKSFAMSSTFFLRKVQFMHRAKTFDKVIN 538
P ++ +++ + + L+CFRS+C E ++ F +F+ + ++ I+
Sbjct: 7 PLDLEEEILFRVPPRSLHCFRSVCKEWNALSRDKRLINKNFACAPPEFILKTRSNIYSIS 66
Query: 537 ISFNCKIAKVDIRMAVTSSRLTG 469
++ N +++R L G
Sbjct: 67 VNLNDDNPTINVRDLCFGDHLRG 89
>At4g11460.1 68417.m01844 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 428 PPSSAGRIPGRDQPPVSREDVTAIRISTLAILQLKLILMTLSKVLALCINCTLRRKKVLD 607
PPSS + P PPV+ +D I T+ + + + ++ + +LAL ++ RKK
Sbjct: 262 PPSSQLQSP----PPVTNKDEKTIHTGTIIGIVIVVAMVIIMALLALGVSVCRSRKKYQA 317
Query: 608 IAKD 619
A +
Sbjct: 318 FASE 321
>At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putative /
O-acetylserine (thiol)-lyase, putative / O-acetylserine
sulfhydrylase, putative identical to SP|O22682 Probable
cysteine synthase, chloroplast precursor {Arabidopsis
thaliana}, similar to SP|P31300 Cysteine synthase,
chloroplast precursor {Capsicum annuum}
Length = 404
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 33 YKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAED 200
+ + +D+ VRT + VV K T +K KP P P T VAE+
Sbjct: 34 FSFHHDSSSSLAVRT-PVSSFVVGAISGKSSTGTKSKSKTKRKPPPPPPVTTVAEE 88
>At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 538
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 610 CKGFAYVHFKFRADAAKAIQSLNG 681
CKGFA+V FK DA + ++ G
Sbjct: 232 CKGFAHVDFKTEIDANRFVKQFTG 255
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 559 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
FG + +A + TG KG+ +V F+ A AI LNG
Sbjct: 159 FGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNG 198
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +1
Query: 463 SAPCE-S*RRNCHPYINLSNFAVEADIDDLV---KGFGPVHKLYLAKEKSTGHCKGFAYV 630
SAP + S + I +SN E D L+ FG + + L +K TG KGF
Sbjct: 232 SAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLF 291
Query: 631 HFKFRADAAKAIQ 669
+K A +A++
Sbjct: 292 VYKSSESAKRALE 304
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +1
Query: 463 SAPCE-S*RRNCHPYINLSNFAVEADIDDLV---KGFGPVHKLYLAKEKSTGHCKGFAYV 630
SAP + S + I +SN E D L+ FG + + L +K TG KGF
Sbjct: 232 SAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLF 291
Query: 631 HFKFRADAAKAIQ 669
+K A +A++
Sbjct: 292 VYKSSESAKRALE 304
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +1
Query: 463 SAPCE-S*RRNCHPYINLSNFAVEADIDDLV---KGFGPVHKLYLAKEKSTGHCKGFAYV 630
SAP + S + I +SN E D L+ FG + + L +K TG KGF
Sbjct: 232 SAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLF 291
Query: 631 HFKFRADAAKAIQ 669
+K A +A++
Sbjct: 292 VYKSSESAKRALE 304
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 592 EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 681
E++TG +GF ++ F+ + A+ ++NG
Sbjct: 253 ERNTGRSRGFGFISFESAENVQSALATMNG 282
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 559 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 669
FG V ++ + +EK+TG +GF +V F A + +Q
Sbjct: 29 FGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +1
Query: 526 VEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLIL 705
+++ + FG + ++++ TG G+AY+ K A+ A + + G+D ++
Sbjct: 250 IKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKEGAEKALELGRHDVGGWDLVVG 309
Query: 706 NVE 714
E
Sbjct: 310 KAE 312
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,744,908
Number of Sequences: 28952
Number of extensions: 298961
Number of successful extensions: 956
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -