Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00524
(707 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 156 6e-37
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 155 1e-36
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 148 2e-34
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 148 2e-34
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 127 3e-28
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 123 4e-27
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 115 1e-24
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 113 5e-24
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 109 5e-23
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 100 3e-20
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 99 1e-19
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 98 2e-19
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 89 1e-16
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 87 4e-16
UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo sapiens... 80 6e-14
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 69 1e-10
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 60 7e-08
UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella... 47 4e-04
UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1; Thermoc... 44 0.005
UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2; Methano... 42 0.011
UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 42 0.020
UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1; ... 41 0.034
UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1; Nanoarc... 40 0.079
UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n... 39 0.10
UniRef50_A0UBB5 Cluster: Putative uncharacterized protein; n=1; ... 38 0.18
UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6; Halobac... 38 0.18
UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n... 37 0.42
UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum... 37 0.42
UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7; Euryarc... 36 0.98
UniRef50_Q47TH7 Cluster: Regulatory protein, MerR; n=1; Thermobi... 35 2.3
UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 34 3.0
UniRef50_Q87BM0 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_A1FR57 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_Q2H5M1 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus ... 34 3.9
UniRef50_A6L045 Cluster: Putative uncharacterized protein; n=1; ... 33 5.2
UniRef50_Q0IR54 Cluster: Os11g0676800 protein; n=1; Oryza sativa... 33 5.2
UniRef50_O86476 Cluster: Clumping factor B precursor; n=31; Stap... 33 5.2
UniRef50_Q6N427 Cluster: Phytoene dehydrogenase-related protein;... 33 6.9
UniRef50_Q4FP88 Cluster: Oligopeptidase B; n=2; Candidatus Pelag... 33 6.9
UniRef50_Q1EY35 Cluster: Major facilitator superfamily MFS_1 pre... 33 9.1
UniRef50_A0L8P8 Cluster: Methyl-accepting chemotaxis sensory tra... 33 9.1
UniRef50_P17473 Cluster: Trans-acting transcriptional protein IC... 33 9.1
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 156 bits (378), Expect = 6e-37
Identities = 76/102 (74%), Positives = 87/102 (85%), Gaps = 1/102 (0%)
Frame = +2
Query: 254 AKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKR 433
+KGHSCYRPRR GERKRKSVRGCIVDANLSVL LVIV+KG ++IPGLTD VPRRLGPKR
Sbjct: 78 SKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKR 137
Query: 434 ASKIRKLFNLSKEDDVRRYVVKRVLQLR-KEKKTLNPDIRHL 556
AS+IRKLFNLSKEDDVR+YVV++ L K+ +T P I+ L
Sbjct: 138 ASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRL 179
Score = 136 bits (329), Expect = 5e-31
Identities = 60/79 (75%), Positives = 69/79 (87%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWKGYV+R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQR 260
FPMKQGVLT+ RVRLL+ +
Sbjct: 61 FPMKQGVLTHGRVRLLLSK 79
Score = 58.0 bits (134), Expect = 2e-07
Identities = 32/61 (52%), Positives = 35/61 (57%)
Frame = +1
Query: 523 KENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVR 702
KE KPR KAPKIQRLVTP VLQ AEYAKLLA+R KE+K +
Sbjct: 164 KEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEK 223
Query: 703 R 705
R
Sbjct: 224 R 224
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 155 bits (376), Expect = 1e-36
Identities = 82/145 (56%), Positives = 101/145 (69%), Gaps = 11/145 (7%)
Frame = +2
Query: 155 MEGLCTSCRWRQRQARIP---DETGRPDKQPCSSSD------AKGHSCYRPRRDGERKRK 307
+ G C W+ RI D+ G P KQ ++ +KGHSCYRPRR GERKRK
Sbjct: 36 VSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRK 95
Query: 308 SVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRR 487
SVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD +PRRLGPKR KIRK+FNLSKEDDVR+
Sbjct: 96 SVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQ 155
Query: 488 YVVKRVLQLRKEKKTLN--PDIRHL 556
YV++R L ++ KK + P I+ L
Sbjct: 156 YVIRRPLPEKEGKKAKSKAPKIQRL 180
Score = 131 bits (316), Expect = 2e-29
Identities = 55/79 (69%), Positives = 65/79 (82%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MKLN+SYP TGCQKL E+ DE K+R FY+KRM EV + LGDEWKGYV R+ GGNDKQG
Sbjct: 1 MKLNISYPVTGCQKLIEIEDERKVRSFYDKRMAMEVSGECLGDEWKGYVFRITGGNDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQR 260
FPMKQG++TN RVRLL+ +
Sbjct: 61 FPMKQGIMTNGRVRLLLSK 79
Score = 56.8 bits (131), Expect = 5e-07
Identities = 33/66 (50%), Positives = 38/66 (57%)
Frame = +1
Query: 508 PAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKK 687
P KEGK K + KAPKIQRLVTPVVLQ A+YAKLLA+R K
Sbjct: 163 PEKEGK---KAKSKAPKIQRLVTPVVLQRKRKRLALKRQRAQKCKQEAADYAKLLAKRAK 219
Query: 688 ESKVRR 705
E+K +R
Sbjct: 220 EAKEKR 225
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 148 bits (358), Expect = 2e-34
Identities = 67/76 (88%), Positives = 71/76 (93%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG VEAD LGDEWKGY LR+AGGNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 204 FPMKQGVLTNSRVRLL 251
FPMKQGVLT+ R+RLL
Sbjct: 61 FPMKQGVLTHGRLRLL 76
Score = 60.9 bits (141), Expect = 3e-08
Identities = 48/127 (37%), Positives = 65/127 (51%), Gaps = 8/127 (6%)
Frame = +2
Query: 182 WRQRQARIP---DETGRPDKQPCSSSDA-----KGHSCYRPRRDGERKRKSVRGCIVDAN 337
W+ Q RI D+ G P KQ + K HSC+ PR + RK K+VR V+AN
Sbjct: 45 WKGYQLRIAGGNDKQGFPMKQGVLTHGRLRLLKKIHSCFHPRCNKVRKCKTVRKYTVEAN 104
Query: 338 LSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLQLR 517
+S L LV+++K P RLGP R+S I K++ L +EDD V+ LQ R
Sbjct: 105 VSALTLVVLKKNPS----------PCRLGPVRSSNISKIYYLCEEDD---EVIPVKLQRR 151
Query: 518 KEKKTLN 538
+KK N
Sbjct: 152 HQKKRQN 158
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 148 bits (358), Expect = 2e-34
Identities = 72/102 (70%), Positives = 84/102 (82%), Gaps = 2/102 (1%)
Frame = +2
Query: 257 KGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRA 436
KGHSCYRPRR GERKRKSVRGCIVD NLS LAL++V+KG ++IPGLTD V RRLGPKRA
Sbjct: 79 KGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKDIPGLTDTTVLRRLGPKRA 138
Query: 437 SKIRKLFNLSKEDDVRRYVVKRVLQLR--KEKKTLNPDIRHL 556
S IRKL+NL+KEDDVR+YVVKR L + K+ +T P I+ L
Sbjct: 139 SNIRKLYNLTKEDDVRQYVVKRPLPEKDGKKPRTKAPKIQRL 180
Score = 143 bits (346), Expect = 4e-33
Identities = 62/79 (78%), Positives = 73/79 (92%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MKLNVS+PATG QK FEV+D+HKLR FY+KRMGAE+ AD LGDEWKGYV ++AGGNDKQG
Sbjct: 1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQR 260
FPMKQGVLTN+RVRLL+++
Sbjct: 61 FPMKQGVLTNTRVRLLLKK 79
Score = 57.2 bits (132), Expect = 4e-07
Identities = 30/66 (45%), Positives = 39/66 (59%)
Frame = +1
Query: 508 PAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKK 687
P K+GK KPR KAPKIQRL+TPVVLQ +EAEY K+L R++
Sbjct: 163 PEKDGK---KPRTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRR 219
Query: 688 ESKVRR 705
+ ++RR
Sbjct: 220 QERIRR 225
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 127 bits (306), Expect = 3e-28
Identities = 58/100 (58%), Positives = 74/100 (74%)
Frame = +2
Query: 257 KGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRA 436
KG CYRPR+ GE++RKSVRGCIV +LS L L +V+KG EIPGLTD V ++LGPKRA
Sbjct: 120 KGMKCYRPRKKGEKRRKSVRGCIVGQDLSALNLTLVKKGTNEIPGLTDKAVGKKLGPKRA 179
Query: 437 SKIRKLFNLSKEDDVRRYVVKRVLQLRKEKKTLNPDIRHL 556
+KIRKLFNL K DDVR+YV+ R + + + + P I+ L
Sbjct: 180 TKIRKLFNLDKTDDVRKYVIGRAISKNGKNRFIKPKIQRL 219
Score = 101 bits (241), Expect = 2e-20
Identities = 47/79 (59%), Positives = 57/79 (72%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MKLN+S P QK E+ DE KL F EKR+G V D +G+E+ GYV R+ GGNDKQG
Sbjct: 42 MKLNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNVVPGDSIGEEFLGYVFRITGGNDKQG 101
Query: 204 FPMKQGVLTNSRVRLLMQR 260
FPM QGVLTN+RVRLL ++
Sbjct: 102 FPMMQGVLTNNRVRLLFKK 120
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 123 bits (297), Expect = 4e-27
Identities = 53/78 (67%), Positives = 65/78 (83%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MKLN+S+PATGCQKL E DE K R FYEK M +EV AD LG+EWKGY++R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEADDERKPRTFYEKHMASEVAADALGEEWKGYMVRISGGNDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQ 257
FPMKQ VLT+ R+ LL++
Sbjct: 61 FPMKQDVLTHDRIHLLLR 78
Score = 62.9 bits (146), Expect = 7e-09
Identities = 32/56 (57%), Positives = 40/56 (71%), Gaps = 5/56 (8%)
Frame = +2
Query: 377 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDD-----VRRYVVKRVLQLRKEKK 529
++IPGLTD PR +GPKRAS+IRKLFNLSKEDD + R + KR+ + KE K
Sbjct: 80 KDIPGLTDTTEPRHVGPKRASRIRKLFNLSKEDDAAQNSILRKIRKRIYKRMKEAK 135
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 115 bits (277), Expect = 1e-24
Identities = 50/79 (63%), Positives = 63/79 (79%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MK N+SYP TG QK E+ D+ K IF++KRMG VEAD LG+E+KGYVL++ GGNDKQG
Sbjct: 1 MKFNISYPLTGAQKTVEIDDDKKCSIFFDKRMGQVVEADNLGEEYKGYVLKITGGNDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQR 260
FPM+QGVL RVR+LM++
Sbjct: 61 FPMRQGVLFKGRVRILMRK 79
Score = 111 bits (267), Expect = 2e-23
Identities = 56/104 (53%), Positives = 72/104 (69%), Gaps = 4/104 (3%)
Frame = +2
Query: 257 KGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRA 436
KGH YRPR+DGE KRKS+RGCIV ++ VLAL +V+KGA EI GLTD NVPRRLGPKR
Sbjct: 79 KGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGANEIAGLTDQNVPRRLGPKRL 138
Query: 437 SKIRKLFNLSKEDD---VRRYVVKRVLQLRKEKKTLN-PDIRHL 556
+K+R+LF K D V++ +++R + KK P I+ L
Sbjct: 139 TKLRRLFGFKKADGVAIVQKNLIRRTWTTKDGKKRQKAPKIQRL 182
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 113 bits (271), Expect = 5e-24
Identities = 49/77 (63%), Positives = 59/77 (76%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MK N+SYP TG QK E+ D+ K IF +K+MG EVE D LGDE+KGYV ++AGGNDK G
Sbjct: 1 MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDG 60
Query: 204 FPMKQGVLTNSRVRLLM 254
FPMKQGV+ RVRLL+
Sbjct: 61 FPMKQGVMVRGRVRLLL 77
Score = 109 bits (263), Expect = 5e-23
Identities = 56/105 (53%), Positives = 74/105 (70%), Gaps = 4/105 (3%)
Frame = +2
Query: 254 AKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKR 433
++GHSC+ RR G RKRKSVRGCIV ++ VLAL IV+KG EI GLT +PR+LGPKR
Sbjct: 78 SEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAEIDGLTTVTLPRKLGPKR 137
Query: 434 ASKIRKLFNLSKEDD---VRRYVVKRVLQLRKEK-KTLNPDIRHL 556
A+ I+KLF L KEDD +++ V++R + K K +T P I+ L
Sbjct: 138 ANNIKKLFGLKKEDDPILIKKSVIRRTFKTAKGKDRTKCPKIQRL 182
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 109 bits (263), Expect = 5e-23
Identities = 50/75 (66%), Positives = 59/75 (78%)
Frame = +2
Query: 257 KGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRA 436
KGH YRPR+DGE KRKS+RGCIV ++ VLAL +V+KGA EI GLTD NVPRRLGPKR
Sbjct: 84 KGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGANEIAGLTDQNVPRRLGPKRL 143
Query: 437 SKIRKLFNLSKEDDV 481
+K+R+LF K D V
Sbjct: 144 TKLRRLFGFKKADRV 158
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 100 bits (240), Expect = 3e-20
Identities = 43/80 (53%), Positives = 64/80 (80%)
Frame = +2
Query: 263 HSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASK 442
+ CY+P R+GER+RK+VRG IV ++SVL ++V+KG EI G+T+ +P R GP+RAS
Sbjct: 80 NGCYKPLRNGERRRKTVRGAIVAGDISVLNTIVVKKGEGEIEGVTNDALPMRAGPQRASH 139
Query: 443 IRKLFNLSKEDDVRRYVVKR 502
RKLFNLS++DDV+++V++R
Sbjct: 140 FRKLFNLSQKDDVKKFVIRR 159
Score = 97.9 bits (233), Expect = 2e-19
Identities = 44/76 (57%), Positives = 57/76 (75%)
Frame = +3
Query: 27 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 206
K+NV+YPATG K F+ +E R F +KR+G EV+A LGDE+KGY+L++ GG DK GF
Sbjct: 1 KINVAYPATGRIKKFDFEEEKNYRPFLDKRIGQEVDASSLGDEFKGYILKITGGCDKDGF 60
Query: 207 PMKQGVLTNSRVRLLM 254
PM GV TN+RVRLL+
Sbjct: 61 PMMTGVATNNRVRLLL 76
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 98.7 bits (235), Expect = 1e-19
Identities = 47/90 (52%), Positives = 69/90 (76%), Gaps = 1/90 (1%)
Frame = +2
Query: 290 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSK 469
GER+RK+VRGC++ ++++++ + I + G Q I G+TD PRRLGPKRASKIRKLFNLS+
Sbjct: 93 GERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSR 152
Query: 470 EDDVRRYVV-KRVLQLRKEKKTLNPDIRHL 556
+DVR+YVV +RV++ K+ + P I+ L
Sbjct: 153 TEDVRKYVVRRRVVKSGKKDRLKAPKIQRL 182
Score = 83.4 bits (197), Expect = 5e-15
Identities = 40/80 (50%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRI-FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 200
MKLN++YP G K FE+ DE R+ + R+G EV+ G E+KGY+ R+ GG+DK
Sbjct: 1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKD 60
Query: 201 GFPMKQGVLTNSRVRLLMQR 260
GFPM GVL +SRV LL++R
Sbjct: 61 GFPMVPGVLASSRVSLLVKR 80
Score = 33.9 bits (74), Expect = 3.9
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +1
Query: 523 KENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVR 702
K K R KAPKIQRL+TP V + EY +L+A ++ + R
Sbjct: 167 KSGKKDRLKAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQR 226
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 98.3 bits (234), Expect = 2e-19
Identities = 49/100 (49%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Frame = +2
Query: 260 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 439
G SCYRPR+DGERKRK+VRGCI+ +S L V+++KG +EI GLT VPRR GPKRAS
Sbjct: 80 GASCYRPRKDGERKRKTVRGCIISDEISALHCVVLQKGEKEIDGLTTTAVPRRFGPKRAS 139
Query: 440 KIRKLFNLS-KEDDVRRYVVKRVLQLRKEKKTLNPDIRHL 556
+R +F ++ + D + V+KR + K K +P ++ L
Sbjct: 140 TLRAMFGITDSKFDASKLVLKREV---KPGKFTSPKVQRL 176
Score = 91.1 bits (216), Expect = 2e-17
Identities = 37/78 (47%), Positives = 57/78 (73%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
M++ ++YP G Q + ++ D L YEKR+G ++E ++LG ++KGY+ R+ GG DKQG
Sbjct: 1 MRITLAYPENGTQVVVDIDDPAALNALYEKRVGQDIEGEKLGGQFKGYLFRIGGGFDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQ 257
FPMKQGV+T R+RLL++
Sbjct: 61 FPMKQGVITPRRIRLLLK 78
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 89.0 bits (211), Expect = 1e-16
Identities = 42/69 (60%), Positives = 53/69 (76%)
Frame = +2
Query: 257 KGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRA 436
+G CY RR+GERKRKS+RGCIV +L L++V+V G + +PGLTD VP+RL PKRA
Sbjct: 85 QGAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVLVDAGDKTLPGLTDVVVPKRLVPKRA 144
Query: 437 SKIRKLFNL 463
SKIR+LF L
Sbjct: 145 SKIRRLFGL 153
Score = 74.9 bits (176), Expect = 2e-12
Identities = 34/78 (43%), Positives = 48/78 (61%)
Frame = +3
Query: 27 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 206
K+N+S P TG K + D K + + RM +E + LG+E+ G R+ GGND QGF
Sbjct: 8 KVNISNPVTGANKSLMIEDFRKSQTIHGLRMASEFDGAALGEEYAGCTFRITGGNDAQGF 67
Query: 207 PMKQGVLTNSRVRLLMQR 260
PM QGVL + R RLL+++
Sbjct: 68 PMYQGVLKSQRARLLLRQ 85
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 87.0 bits (206), Expect = 4e-16
Identities = 35/81 (43%), Positives = 57/81 (70%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MK N++ P+TG Q E+ DE KLRI Y K++ ++++ +G EW + + GG DKQG
Sbjct: 1 MKFNIANPSTGVQHTIEIDDEDKLRILYGKKLTSKIDGKIIGKEWDKSIFIITGGQDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQRAT 266
FPMK+G+L+ SRV++L+++ +
Sbjct: 61 FPMKEGILSPSRVKILLKKGS 81
Score = 58.4 bits (135), Expect = 2e-07
Identities = 30/82 (36%), Positives = 50/82 (60%)
Frame = +2
Query: 284 RDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNL 463
+ GER RKSVRGCIV +SVL + ++ ++ +T+ N + L KR+S +RK+ L
Sbjct: 90 KKGERCRKSVRGCIVSPEISVLNIKLLTNKNDDLL-ITNKNSEKTLTHKRSSNLRKVLCL 148
Query: 464 SKEDDVRRYVVKRVLQLRKEKK 529
+K DD+R++ +K + + K
Sbjct: 149 TKTDDIRKHYIKIAKDFKNKVK 170
>UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo
sapiens|Rep: Ribosomal protein S6 - Homo sapiens (Human)
Length = 91
Score = 79.8 bits (188), Expect = 6e-14
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWK 161
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWK
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWK 46
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 68.5 bits (160), Expect = 1e-10
Identities = 38/100 (38%), Positives = 57/100 (57%)
Frame = +2
Query: 254 AKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKR 433
+KG + YR RR G R+RKSVRG IV + VL L+I+R G +EI GLT+ P++
Sbjct: 63 SKGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHLPRK 122
Query: 434 ASKIRKLFNLSKEDDVRRYVVKRVLQLRKEKKTLNPDIRH 553
K+RK+F + E+ ++ +L+ + P IRH
Sbjct: 123 EKKLRKMFGVPDEEKNVVGYIRNILKSECDDPKKIPKIRH 162
Score = 59.3 bits (137), Expect = 9e-08
Identities = 25/65 (38%), Positives = 45/65 (69%)
Frame = +3
Query: 66 LFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVR 245
+FE+ +++R+ Y+K++G + + LG+E++G ++ + GG+D QGFPM G LT RVR
Sbjct: 1 MFEIERRNEVRL-YDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVR 59
Query: 246 LLMQR 260
L+ +
Sbjct: 60 PLLSK 64
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 59.7 bits (138), Expect = 7e-08
Identities = 39/94 (41%), Positives = 53/94 (56%)
Frame = +2
Query: 257 KGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRA 436
K HSC+ PR + RK K+VR V+AN+S L LV+++K P RLGP R+
Sbjct: 25 KIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS----------PCRLGPVRS 74
Query: 437 SKIRKLFNLSKEDDVRRYVVKRVLQLRKEKKTLN 538
S I K++ L +EDD V+ LQ R +KK N
Sbjct: 75 SNISKIYYLCEEDD---EVIPVKLQRRHQKKRQN 105
>UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella
natans|Rep: Ribosomal protein S6 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 239
Score = 47.2 bits (107), Expect = 4e-04
Identities = 27/96 (28%), Positives = 55/96 (57%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MK+N++ P G Q + DE I K +G +E LG+++ + GG+DKQG
Sbjct: 1 MKINIADPILGTQYSIKRDDEFIEHIIGRK-IGDTIEGSILGEDFSRNEFLINGGHDKQG 59
Query: 204 FPMKQGVLTNSRVRLLMQRATHVTDRAAMERENVNQ 311
F +K+ + T R+++ +++ + + +R+ +R+N+ +
Sbjct: 60 FLLKKNLNTFERLKINVKKGS-LGNRSHFKRKNLTK 94
>UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1;
Thermococcus kodakarensis KOD1|Rep: 30S ribosomal
protein S6e - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 125
Score = 43.6 bits (98), Expect = 0.005
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Frame = +3
Query: 18 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLG---DEWKGYV------ 170
A KL +S P G K E+ ++ +R+G E+ A +LG E G
Sbjct: 2 ATFKLVISNPKNGVAKQVEISGPEADKLI-GRRIGEEIPASELGLNLSEIFGEEIPADAK 60
Query: 171 LRVAGGNDKQGFPMKQGVLTNSRVRLLMQRATHVTDRAAMER 296
L++ GG DK GFPM+ V RV++L+ R R ER
Sbjct: 61 LKITGGTDKDGFPMRPDVHGPRRVKILLSRGPGFRPRERGER 102
>UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2;
Methanobacteriaceae|Rep: 30S ribosomal protein S6e -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 130
Score = 42.3 bits (95), Expect = 0.011
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = +3
Query: 114 RMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMQRAT 266
++G E LG KGY LR+ GG+DK GFPMK+ V R + L+ T
Sbjct: 30 KIGEEFNGGVLG--LKGYKLRITGGSDKNGFPMKEDVDGTRRFKSLVNGGT 78
>UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Pyrococcus
furiosus
Length = 125
Score = 41.5 bits (93), Expect = 0.020
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Frame = +3
Query: 18 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQL--------GDEWKGYV- 170
A KL +S P +G K E+ ++ KR+G ++ A +L G E+ V
Sbjct: 2 ATFKLVISDPKSGIAKQVEITGAETEKLI-GKRIGDQIPAKELNINLNELFGKEFPEDVK 60
Query: 171 LRVAGGNDKQGFPMKQGVLTNSRVRLLMQRATHVTDRAAMER 296
L + GG DK GFPM+ + RVR+L+ + + ER
Sbjct: 61 LEIRGGTDKDGFPMRPDIHGPRRVRVLLSKGPGFRPKEKGER 102
>UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S6E - Ignicoccus hospitalis KIN4/I
Length = 236
Score = 40.7 bits (91), Expect = 0.034
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 KLFEV-VDEHKLRIFYEKRMGAEVEADQLGDEW-KGYVLRVAGGNDKQGFPMKQGVLTNS 236
K F++ ++ R F KR+G V A LG E KG L + GG+D+ GFPM+ +
Sbjct: 133 KAFQITIEGENARKFIGKRIGETVPASILGIETLKGLQLEIRGGSDESGFPMRPDIPGPV 192
Query: 237 RVRLLM 254
+ R L+
Sbjct: 193 KKRALL 198
>UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S6e -
Nanoarchaeum equitans
Length = 126
Score = 39.5 bits (88), Expect = 0.079
Identities = 23/69 (33%), Positives = 40/69 (57%)
Frame = +3
Query: 18 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDK 197
+V+K+ VS P +G E + L Y K++G ++ ++G + GY L++ GG+D
Sbjct: 5 SVVKIVVSDPKSGKAIQIETKEPQWL---YGKKIGDTIDGSKIGLD--GYELKITGGSDI 59
Query: 198 QGFPMKQGV 224
GFPM++ V
Sbjct: 60 AGFPMRKEV 68
>UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC1AEC UniRef100 entry -
Rattus norvegicus
Length = 227
Score = 39.1 bits (87), Expect = 0.10
Identities = 36/106 (33%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +3
Query: 27 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 206
KLN+S+ Q L EV + KLR FYEK M E+ + +E N + F
Sbjct: 2 KLNISFLLIVYQILTEVDGKCKLRAFYEKCMTTEITVNFSCEE-----------NADKIF 50
Query: 207 PMKQGVLTNSRVRLLMQRATHVTDRAAMERE-NVNQFVDVLLTPIS 341
MKQ VL + RV LL+ + RE N D + PIS
Sbjct: 51 SMKQEVLIHFRVHLLLNNLHSYIYKPLRTREMNYTSLQDAVKLPIS 96
>UniRef50_A0UBB5 Cluster: Putative uncharacterized protein; n=1;
Burkholderia multivorans ATCC 17616|Rep: Putative
uncharacterized protein - Burkholderia multivorans ATCC
17616
Length = 165
Score = 38.3 bits (85), Expect = 0.18
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Frame = +2
Query: 200 RIPDETGRPDKQP--------CSSSDAKGHSCYRPRRDGERKRKSVRGCIVDANLSVLAL 355
R+P+E G+ + +P C+ A GH+ R R R R+ GC +DA L
Sbjct: 49 RVPEEIGQHEFRPDVVGQHVQCAGHGAVGHAEQRRGRHRRRYRREHAGCGIDAERRERRL 108
Query: 356 VIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKL 454
+ A P RR+GP RA +++ L
Sbjct: 109 TDASRRAVRAPLRRPVGARRRVGPCRARRMKDL 141
>UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S6e -
Halobacterium salinarium (Halobacterium halobium)
Length = 131
Score = 38.3 bits (85), Expect = 0.18
Identities = 26/96 (27%), Positives = 46/96 (47%)
Frame = +3
Query: 18 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDK 197
A ++ V+ P +G FEV D F + +GA V+ +G + GY + + GG+D
Sbjct: 2 ATFQVAVADPESGRTYQFEV-DGQDANRFIGREIGAAVDGGAVGLD--GYTVEITGGSDD 58
Query: 198 QGFPMKQGVLTNSRVRLLMQRATHVTDRAAMERENV 305
G PM++ V + + +L++ ER+ V
Sbjct: 59 AGRPMREDVDGSDLMEVLLEGGAGFNPDEDGERKRV 94
Score = 36.3 bits (80), Expect = 0.74
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +2
Query: 209 DETGRPDKQPCSSSDA-----KGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 373
D+ GRP ++ SD +G + + P DGERKR +VRG V ++ L + I G
Sbjct: 57 DDAGRPMREDVDGSDLMEVLLEGGAGFNPDEDGERKRVTVRGKEVSEAVAQLNVAIDEHG 116
Query: 374 AQEIPGL 394
+ + L
Sbjct: 117 EEPVAEL 123
>UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 211
Score = 37.1 bits (82), Expect = 0.42
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = -1
Query: 254 HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFI 150
H++ +T V Q AL H E+LLVV D + ++LPF+
Sbjct: 177 HEQEHTLVRQHALLHAEALLVVTTHDLEDVSLPFL 211
>UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein S6E - Cenarchaeum
symbiosum
Length = 133
Score = 37.1 bits (82), Expect = 0.42
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +3
Query: 117 MGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMQRATHVTD 278
+G+E +A LG E K +R+ GG+DK G PM+ V +R +L+ R + D
Sbjct: 39 IGSEADATALGLEGK---IRITGGSDKSGVPMRPDVHGPARKYVLLSRGVGLRD 89
>UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Archaeoglobus fulgidus
Length = 129
Score = 35.9 bits (79), Expect = 0.98
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +3
Query: 36 VSYPATG--CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFP 209
+S P TG QK+ E + ++L K++G +V + + D Y L++ GG D+ GFP
Sbjct: 7 ISDPKTGRAYQKVVEGANANRL---IGKQIG-DVISGTIVDLPPDYELKITGGTDRDGFP 62
Query: 210 MKQGVLTNSRVRLLM 254
M+ + +R RLL+
Sbjct: 63 MRPDLPGTARRRLLL 77
Score = 33.1 bits (72), Expect = 6.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 272 YRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 373
+RP+ G RKRK VRG ++ ++ + V+V+ G
Sbjct: 83 FRPKEKGLRKRKGVRGRVISKDILQINTVVVKHG 116
>UniRef50_Q47TH7 Cluster: Regulatory protein, MerR; n=1;
Thermobifida fusca YX|Rep: Regulatory protein, MerR -
Thermobifida fusca (strain YX)
Length = 147
Score = 34.7 bits (76), Expect = 2.3
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +2
Query: 386 PGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLQLRKEKKTLNPDIRHLRS 562
PG T G RR + +R++ LS+E+ + +KR+L+L++E L I HL +
Sbjct: 40 PGRTPGR-GRRYSMRDIQMLREVQRLSQEEGINLAGIKRILELQREVAELREHIFHLHN 97
>UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Methanococcus
maripaludis
Length = 124
Score = 34.3 bits (75), Expect = 3.0
Identities = 15/49 (30%), Positives = 31/49 (63%)
Frame = +3
Query: 111 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMQ 257
K++G E+ + E +GY L++ GG+D+ GF M+ + ++R+L++
Sbjct: 28 KKIGDEISGSIV--ELEGYKLKITGGSDRCGFAMRHDIHGAMKMRVLLK 74
>UniRef50_Q87BM0 Cluster: Putative uncharacterized protein; n=1;
Xylella fastidiosa Temecula1|Rep: Putative
uncharacterized protein - Xylella fastidiosa (strain
Temecula1 / ATCC 700964)
Length = 109
Score = 33.9 bits (74), Expect = 3.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 161 GLCTSCRWRQRQARIPDETGRPDKQPCSSSDAKGHS 268
G C RWR ++ + DE G + PC+ D +G S
Sbjct: 17 GACCMARWRCQEINVTDEVGYGMRLPCTPHDVRGCS 52
>UniRef50_A1FR57 Cluster: Putative uncharacterized protein; n=1;
Stenotrophomonas maltophilia R551-3|Rep: Putative
uncharacterized protein - Stenotrophomonas maltophilia
R551-3
Length = 90
Score = 33.9 bits (74), Expect = 3.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 203 IPDETGRPDKQPCSSSDAKGHSCYRPRRDGERKRKSVRGC 322
+P + GRP K + SDA+ + YR RR G+ VR C
Sbjct: 14 LPRKRGRPPKFGYAMSDAQRAARYRARRAGQANHADVRAC 53
>UniRef50_Q2H5M1 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 494
Score = 33.9 bits (74), Expect = 3.9
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 155 MEGLCTSCRWRQRQARIPDETGRPDKQPCSSSDAKGHSC 271
+ G C +CR R+ + +P + GRP+ C SS GH+C
Sbjct: 6 LSGYCLTCRKRRVKCDVPADKGRPNCGRCISS---GHTC 41
>UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S6e -
Methanoregula boonei (strain 6A8)
Length = 143
Score = 33.9 bits (74), Expect = 3.9
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +3
Query: 111 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMQRATHVTDRAAM 290
K++G EV+A LG GY + + GG+D+ G P ++ + R +LL+ A V M
Sbjct: 32 KKIGDEVDAGPLG--LAGYKILITGGSDQTGTPARKSLPGAGRRKLLL--AEGVGFHPVM 87
Query: 291 ERENVNQFV 317
E E + +
Sbjct: 88 EGERKRKMI 96
>UniRef50_A6L045 Cluster: Putative uncharacterized protein; n=1;
Bacteroides vulgatus ATCC 8482|Rep: Putative
uncharacterized protein - Bacteroides vulgatus (strain
ATCC 8482 / DSM 1447 / NCTC 11154)
Length = 541
Score = 33.5 bits (73), Expect = 5.2
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +2
Query: 353 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV 493
L+ V +EI LT GNVP+ + R ++RK NLS EDD+ Y+
Sbjct: 494 LLRVNLSTKEISMLT-GNVPKTINMNRY-RLRKSLNLSSEDDLTDYL 538
>UniRef50_Q0IR54 Cluster: Os11g0676800 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os11g0676800 protein -
Oryza sativa subsp. japonica (Rice)
Length = 822
Score = 33.5 bits (73), Expect = 5.2
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Frame = +2
Query: 302 RKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKED-- 475
+KS + C N ++ LV++RKG + LT G + K S RK+ N+SK+
Sbjct: 227 KKSSQSCSGRLNSYIVVLVMLRKGGWKSQQLTIGLARHEVAVKIRSLNRKIENISKDRVF 286
Query: 476 -DVRRYV---VKRVLQLRKEKKTLNPDI 547
++ V VL++RK L P+I
Sbjct: 287 LTLKSTVPTGSSSVLRVRKSSHLLEPNI 314
>UniRef50_O86476 Cluster: Clumping factor B precursor; n=31;
Staphylococcus aureus|Rep: Clumping factor B precursor -
Staphylococcus aureus
Length = 913
Score = 33.5 bits (73), Expect = 5.2
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 27 KLNVSYPAT-GCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
KL+ SY A L EV D+ K RI+YE A ++ GD K YV+ V G D G
Sbjct: 441 KLSDSYYADPNDSNLKEVTDQFKNRIYYEHPNVASIK---FGDITKTYVVLVEGHYDNTG 497
Query: 204 FPMKQGVL 227
+K V+
Sbjct: 498 KNLKTQVI 505
>UniRef50_Q6N427 Cluster: Phytoene dehydrogenase-related protein;
n=24; Bacteria|Rep: Phytoene dehydrogenase-related
protein - Rhodopseudomonas palustris
Length = 590
Score = 33.1 bits (72), Expect = 6.9
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -3
Query: 228 SGRPVSSGILACRCRQ-RHEVHSPSIHRLTDQPL 130
SGRPV+SGILA C Q +++ +P HR + P+
Sbjct: 22 SGRPVTSGILASLCEQWQNQPRTPLSHRSGNLPM 55
>UniRef50_Q4FP88 Cluster: Oligopeptidase B; n=2; Candidatus
Pelagibacter ubique|Rep: Oligopeptidase B - Pelagibacter
ubique
Length = 691
Score = 33.1 bits (72), Expect = 6.9
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 428 KRASKIRKLFNLSKEDDVRRYVVKRVLQLRKEKKTLNPDIR 550
K+ S+I+ N+S EDD +L++ K+ K LNP++R
Sbjct: 7 KKKSEIKTCHNISWEDDYSWIHQDDILEVLKDSKKLNPEVR 47
>UniRef50_Q1EY35 Cluster: Major facilitator superfamily MFS_1
precursor; n=1; Clostridium oremlandii OhILAs|Rep: Major
facilitator superfamily MFS_1 precursor - Clostridium
oremlandii OhILAs
Length = 421
Score = 32.7 bits (71), Expect = 9.1
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = -1
Query: 260 PLHQKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVKDTKLVLV 81
P ++ T T + + + + S LV A +KY+ PFIA LI A+ + D +++
Sbjct: 114 PAYRATVTDIISEENYAKASGLVQIAGTSKYLISPFIAGLILTVSDIRAILIFDIATIII 173
Query: 80 HHF 72
F
Sbjct: 174 TAF 176
>UniRef50_A0L8P8 Cluster: Methyl-accepting chemotaxis sensory
transducer; n=1; Magnetococcus sp. MC-1|Rep:
Methyl-accepting chemotaxis sensory transducer -
Magnetococcus sp. (strain MC-1)
Length = 515
Score = 32.7 bits (71), Expect = 9.1
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +3
Query: 117 MGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMQRATHVTDRAAMER 296
+ A +EA + GD KG+ + A D +Q + ++V+ ++ H TDRA M
Sbjct: 364 LNASIEAAKAGDSGKGFAVVAAEVKDLA----EQSEESTAQVQKILTEIQHATDRAVMAT 419
Query: 297 ENVNQFVDVLLTPISRS 347
E + VD + +SR+
Sbjct: 420 EEGVKDVDQGVILMSRT 436
>UniRef50_P17473 Cluster: Trans-acting transcriptional protein ICP4;
n=11; Varicellovirus|Rep: Trans-acting transcriptional
protein ICP4 - Equine herpesvirus 1 (strain Kentucky A)
(EHV-1) (Equine abortionvirus)
Length = 1487
Score = 32.7 bits (71), Expect = 9.1
Identities = 25/93 (26%), Positives = 39/93 (41%)
Frame = +2
Query: 158 EGLCTSCRWRQRQARIPDETGRPDKQPCSSSDAKGHSCYRPRRDGERKRKSVRGCIVDAN 337
E S R R+ R+ G P ++ +++ A G PR R R+ C++
Sbjct: 614 EAPAPSVRVREAYTRVCAALG-PRRKAAAAAAAPGTRA--PRPSAFRLRELGDACVLACQ 670
Query: 338 LSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRA 436
AL+ +R GA +PGL +P P A
Sbjct: 671 AVFEALLRLRGGASAVPGLDPSEIPSPACPPEA 703
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,964,589
Number of Sequences: 1657284
Number of extensions: 13999739
Number of successful extensions: 42970
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 41336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42940
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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