Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00524
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   0.80 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.8  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    23   3.2  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   4.3  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    22   4.3  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    22   4.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.4  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.8  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.8  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 476 DVRRYVVKRVLQLRKEKKTLNPDIRHLR 559
           +VR +VV  +  L    +TLN  + HLR
Sbjct: 449 EVREFVVNYIDDLLVASETLNEHLEHLR 476



 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 493 RQTRAPAKEGKENAKPRHKAPKI 561
           R T + + EG+ +A+PR    K+
Sbjct: 45  RSTSSQSTEGENDARPRASQVKL 67


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 218 GRPDKQPCSSSDAKGHSCYRPRRDGERKRKSVRGCIV 328
           GR D  P S +     SC   ++ G   R+    C+V
Sbjct: 154 GREDLSPSSLNGYSADSCDSKKKKGPTPRQQEELCLV 190


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 505 HAFDDITTYIIFFAKVEQLTDFGSTFG 425
           H F+ +  Y ++ A + Q+++  +TFG
Sbjct: 508 HLFNGLVDYSLWKALIFQISNLQTTFG 534


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 79  TTSNNFWHPVAGYETFNFMTAVNP 8
           +TSNN WH   G  + N     NP
Sbjct: 370 STSNNRWHNNNGNNSNNHWRKNNP 393


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRI 101
           M ++   P+TG Q + +VV  HKL++
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHKLKL 79


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRI 101
           M ++   P+TG Q + +VV  HKL++
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHKLKL 79


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 284 GAVCNMSGPLHQKTNTAVCQDALFH 210
           G+  +MSG +HQ  N +    +L H
Sbjct: 196 GSWLDMSGGMHQMANYSTDYSSLTH 220


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -3

Query: 183 QRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGI 55
           Q H  H P IH     P+L       +      +PP+ ++S I
Sbjct: 88  QLHSHHGPPIHHQIRPPILHDTQPMCESLN--TQPPVTSSSNI 128


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -3

Query: 183 QRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGI 55
           Q H  H P IH     P+L       +      +PP+ ++S I
Sbjct: 88  QLHSHHGPPIHHQIRPPILHDTQPMCESLN--TQPPVTSSSNI 128


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -3

Query: 183 QRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGI 55
           Q H  H P IH     P+L       +      +PP+ ++S I
Sbjct: 88  QLHSHHGPPIHHQIRPPILHDTQPMCESLN--TQPPVTSSSNI 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,898
Number of Sequences: 336
Number of extensions: 3397
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)