Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00523
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   5.0  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   8.8  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    25   8.8  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   8.8  

>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 502 LVWSFWASLRQYGLTYLPIEAQGNLKNL 419
           L +  W  L +  ++ L I +QGNLK+L
Sbjct: 646 LEYDNWPGLNELEMSQLDIPSQGNLKSL 673


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 479 PPTIWTDILTY*SSREPEESGHCDGPAGRLYPAMMSVD 366
           PPT+  D  T  S +E +ES   D PAG L     ++D
Sbjct: 220 PPTLEEDNSTQNSIKELQESLGEDHPAGALVGVTKTLD 257


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 73  FVILTSYKGTYPYYVTYFFSFF 8
           F+ L  YK  YP+ ++ F S++
Sbjct: 442 FLFLQGYKSLYPFRLSLFVSYY 463


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 362 ISLQTSLLDIASLQVHHNDQILQVPLSFNR*VCQSILSEAC 484
           + L T+L+ +A+LQ   ND+I +V   ++  +   +   AC
Sbjct: 528 VLLLTTLIKLANLQPELNDRIAKVFQEYSTIINPEVQQRAC 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,477
Number of Sequences: 5004
Number of extensions: 44643
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)